Detailed information NTG1021457

Bioinformatically predicted

Overview

• Name: pilQ
• Type: Machinery gene
• Locus tag: AB1S65_RS07250
• Genome accession: NZ_CP160474
• Coordinates: 1765796..1767982 (+)
• Length: 728 a.a.
• NCBI ID: WP_280947733.1
• Uniprot ID: -
• Organism: Saccharophagus degradans strain HMH0004
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1760796..1772982

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AB1S65_RS07230 (AB1S65_07225)	pilM	1762991..1764058 (+)	1068	WP_280947729.1	pilus assembly protein PilM	Machinery gene
AB1S65_RS07235 (AB1S65_07230)	-	1764060..1764620 (+)	561	WP_280947730.1	PilN domain-containing protein	-
AB1S65_RS07240 (AB1S65_07235)	-	1764623..1765237 (+)	615	WP_280947731.1	type 4a pilus biogenesis protein PilO	-
AB1S65_RS07245 (AB1S65_07240)	-	1765246..1765791 (+)	546	WP_280947732.1	pilus assembly protein PilP	-
AB1S65_RS07250 (AB1S65_07245)	pilQ	1765796..1767982 (+)	2187	WP_280947733.1	type IV pilus secretin PilQ	Machinery gene
AB1S65_RS07255 (AB1S65_07250)	aroK	1767985..1768494 (+)	510	WP_280947734.1	shikimate kinase AroK	-
AB1S65_RS07260 (AB1S65_07255)	aroB	1768656..1769744 (+)	1089	WP_280947735.1	3-dehydroquinate synthase	-
AB1S65_RS07265 (AB1S65_07260)	-	1769779..1771269 (+)	1491	WP_280947736.1	SPOR domain-containing protein	-

Sequence

Protein

• Length: 728 a.a.
• Molecular weight: 78882.01 Da
• Isoelectric Point: 4.2926

>NTDB_id=1021457 AB1S65_RS07250 WP_280947733.1 1765796..1767982(+) (pilQ) [Saccharophagus degradans strain HMH0004]
MFTNYFKLCLSAGLLLLASLVNGAALTDMQFAEMPGEKAEIKMQFDSVPSVPQGYTIEQPARIVLDFANTTNTLAKKKYS
VSVGGVESAVVLDAGGKTRLIVNLANLVPYKTRVEGNALIVEIGSESSGAYAARVSAAPEYSSSVAASDSSVSNEEYSSA
AISLVDFRRGEVGEGKVIVSLTNPNVDVDIQEVSGGVEIRFIDTQLPESLRRKLDVIDFATPVSMVSSYIEGNSTVIMLK
ASGEYDYLAYQADNQYVVSVKPLTKQEVEEKKARFAYVGDKLSLNFQDIQVRSVLQLIADFTDLNLVASDTVNGSITLRL
ENVPWDQALDLVLKTKGLDKRQIGTVLMVAPAAEIAAREKMEIDTKKQIQELAPLRTEYIRVRYANARQLFNLFAETGSG
TGSSAGGEGGHRNSTGSILSERGQAIVDERTNSIILTDTEEKIDAFKRLVDQIDIPVRQVMIEARIVIANSDFRKELGVR
MSGDGVETSQSGNNKFELTGRMEGLTAGDGGGPESMFVDGDGDGITDDERDLINSNFVDLAVFNPAGAFTWNIISSNFLL
GMELSAMEDSGYAEIVSQPKVITGDKQQASIESGTQIPYQEESASGGTTTSFKEAVLKLDVTPQITPDNRVIMDLIINQD
SISSIDSNSGIPVIDITQLETQVLVADGETIVLGGIYTTSTFTGETKVPLLGDIPFVGRLFRNDFKSEDKREILIFITPR
IMASNFTE

Nucleotide

• Length: 2187 bp

>NTDB_id=1021457 AB1S65_RS07250 WP_280947733.1 1765796..1767982(+) (pilQ) [Saccharophagus degradans strain HMH0004]
ATGTTCACGAATTATTTTAAATTATGTTTATCTGCCGGTTTGTTGTTGCTGGCGAGCCTCGTGAATGGCGCGGCTTTAAC
GGATATGCAATTTGCAGAGATGCCCGGTGAAAAGGCCGAGATTAAAATGCAGTTTGATTCTGTGCCATCTGTGCCTCAGG
GCTATACGATCGAGCAGCCCGCTAGGATTGTTTTAGATTTTGCCAATACTACCAATACGCTTGCAAAGAAAAAGTATTCT
GTGTCTGTTGGCGGTGTTGAGAGCGCTGTAGTTTTGGATGCTGGAGGTAAGACAAGATTGATTGTTAATCTTGCCAATCT
AGTACCCTATAAGACACGGGTTGAGGGTAACGCGCTAATTGTTGAGATAGGCTCAGAGTCGTCAGGTGCTTATGCTGCTC
GAGTTAGCGCCGCCCCTGAGTACAGCTCAAGTGTTGCTGCGTCTGATTCGTCAGTTAGCAATGAAGAGTATAGTTCTGCA
GCTATTTCTTTGGTGGACTTTAGACGAGGTGAGGTGGGCGAAGGTAAGGTTATTGTTTCGCTAACCAATCCTAATGTTGA
CGTGGATATTCAAGAAGTGTCGGGTGGCGTCGAAATCCGCTTTATCGATACTCAGTTGCCGGAAAGTTTGCGTCGTAAGT
TGGATGTGATTGATTTTGCTACTCCGGTTTCAATGGTGTCCTCATATATTGAAGGTAATTCTACAGTAATCATGCTTAAA
GCTAGCGGCGAGTATGATTACTTGGCTTATCAAGCCGATAATCAATATGTTGTTAGTGTAAAGCCTCTTACTAAACAAGA
GGTGGAAGAGAAGAAGGCTCGGTTTGCTTATGTTGGGGATAAGCTTTCGCTCAACTTTCAGGACATTCAGGTTCGGTCTG
TTTTACAGTTAATCGCTGATTTTACGGATCTTAATTTGGTTGCTAGTGATACTGTTAACGGAAGTATTACGCTTAGGTTG
GAGAATGTGCCTTGGGATCAGGCTCTTGACTTAGTATTAAAGACCAAAGGGTTGGATAAGCGACAAATTGGTACTGTGCT
GATGGTTGCTCCAGCGGCAGAGATAGCTGCTCGTGAGAAAATGGAGATTGACACTAAGAAGCAGATCCAGGAGTTGGCTC
CGTTAAGAACGGAGTACATTCGAGTGCGTTATGCGAATGCGCGCCAACTGTTCAATTTGTTTGCGGAAACAGGGAGTGGT
ACTGGTAGCTCTGCCGGTGGTGAGGGTGGTCACCGTAATTCAACTGGTAGCATTCTTTCAGAGCGCGGTCAGGCAATTGT
TGATGAGCGAACTAATTCGATTATCCTTACCGACACTGAAGAAAAAATTGATGCGTTTAAACGTTTGGTTGATCAAATAG
ATATCCCTGTTCGTCAGGTGATGATTGAGGCTCGAATCGTTATTGCGAATAGCGATTTTAGGAAAGAGCTTGGTGTGCGT
ATGTCTGGAGATGGAGTTGAAACTTCTCAATCAGGTAATAATAAATTTGAGCTTACTGGTCGAATGGAGGGGTTGACTGC
TGGTGATGGCGGCGGCCCAGAGTCGATGTTTGTTGACGGCGATGGGGATGGTATAACTGATGATGAGAGAGATCTAATTA
ATTCCAATTTTGTTGATTTGGCGGTCTTTAACCCAGCCGGAGCGTTCACTTGGAATATTATTAGTTCAAACTTTTTGTTG
GGTATGGAGCTTTCTGCAATGGAAGACTCTGGTTATGCGGAGATCGTATCTCAGCCCAAAGTTATTACGGGTGATAAGCA
ACAAGCCTCAATTGAGTCTGGTACGCAAATCCCTTATCAGGAGGAGTCTGCAAGTGGTGGTACGACAACTTCATTTAAAG
AGGCTGTGTTAAAGCTAGATGTGACTCCGCAAATTACGCCGGATAATCGAGTGATTATGGATTTGATTATCAATCAAGAT
TCTATTAGTTCAATTGATTCAAATAGTGGTATTCCAGTGATCGATATAACTCAGCTGGAAACGCAGGTACTTGTCGCTGA
TGGTGAGACTATCGTGCTTGGCGGTATTTACACTACTAGTACCTTTACTGGTGAAACTAAGGTGCCGTTATTAGGTGATA
TTCCGTTCGTTGGTAGATTATTCCGCAACGACTTCAAATCCGAAGATAAGCGCGAAATATTGATCTTTATCACTCCTCGT
ATTATGGCTTCTAACTTTACTGAATAA

Domains

Predicted by InterproScan.

• Secretin and TonB N terminus short domain (STN) (305-351)

• Bacterial type II and III secretion system protein (Secretin) (566-722)

• AMIN domain (AMIN) (48-123)

• Bacterial type II/III secretion system short domain (Secretin_N) (378-459)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilQ	Pseudomonas aeruginosa PAK	48.889	98.901	0.484
pilQ	Acinetobacter baumannii D1279779	42.083	98.901	0.416
pilQ	Acinetobacter baumannii strain A118	42.083	98.901	0.416
comQ	Acinetobacter baylyi ADP1	41.772	97.665	0.408