Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   ABZP31_RS00715 Genome accession   NZ_CP160437
Coordinates   154871..156355 (-) Length   494 a.a.
NCBI ID   WP_026444024.1    Uniprot ID   -
Organism   Acinetobacter sp. FL     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 149871..161355
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABZP31_RS00690 (ABZP31_00690) - 150576..150956 (-) 381 WP_005017201.1 membrane protein -
  ABZP31_RS00695 (ABZP31_00695) - 151065..151463 (+) 399 WP_005022923.1 MAPEG family protein -
  ABZP31_RS00700 (ABZP31_00700) ppa 151582..152118 (+) 537 WP_005017195.1 inorganic diphosphatase -
  ABZP31_RS00705 (ABZP31_00705) - 152215..153483 (-) 1269 WP_034671029.1 OprD family outer membrane porin -
  ABZP31_RS00710 (ABZP31_00710) - 154049..154816 (+) 768 WP_005405856.1 TorF family putative porin -
  ABZP31_RS00715 (ABZP31_00715) comM 154871..156355 (-) 1485 WP_026444024.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  ABZP31_RS00720 (ABZP31_00720) - 156419..156646 (-) 228 WP_005017183.1 accessory factor UbiK family protein -
  ABZP31_RS00725 (ABZP31_00725) glnK 156916..157254 (+) 339 WP_005017180.1 P-II family nitrogen regulator -
  ABZP31_RS00730 (ABZP31_00730) - 157313..158695 (+) 1383 WP_026444025.1 ammonium transporter -
  ABZP31_RS00735 (ABZP31_00735) nrdR 158817..159269 (+) 453 WP_005017176.1 transcriptional regulator NrdR -
  ABZP31_RS00740 (ABZP31_00740) ribD 159321..160376 (+) 1056 WP_051005726.1 bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD -

Sequence

Protein


Download         Length: 494 a.a.        Molecular weight: 54155.38 Da        Isoelectric Point: 8.3134

>NTDB_id=1021109 ABZP31_RS00715 WP_026444024.1 154871..156355(-) (comM) [Acinetobacter sp. FL]
MSFAKIYTRGVLGLHAPSIEVEVHVSQGLPSLTIVGLPEAAVRESKDRVRSAIINSGFQFPTKRLTINLAPADLPKDGSR
LDLPIALGILVASGQLPEQSTEQIEFIGELALDGCLRPVSGTLAIAMACQKVQHQLILAEANAMEAAQLPDFQVYGAQHL
KQVCQHLLQQQPLLPVKGKLSEAAQDYKLDLADIKGQLRPRRALEIAAAGGHSLLFKGPPGTGKTLLASRLPSILPPPNA
QENLEVASIYSIANVQHPFGQRPFRAPHHTASAIALVGGGSQPKPGEITLAHLGVLFLDELPEFDRKVLEVLRQPLESKE
IVISRASRQMTFPANFQLVAAMNPCPCGYAFNQDNRCQCSADAIKRYQNRISGPLLDRIDLHIDVPPLQAHELQQTTPAE
NSDTVRKRVILAYEQQLQRQSCLNQLLSPKQLELHAQLDQSSLRIIEMAQQRLNLSARAYHRVLRVARTIADLALSKEIQ
TSHLSEALSYRSQS

Nucleotide


Download         Length: 1485 bp        

>NTDB_id=1021109 ABZP31_RS00715 WP_026444024.1 154871..156355(-) (comM) [Acinetobacter sp. FL]
ATGTCTTTTGCCAAAATTTACACCCGGGGGGTGCTGGGGCTACATGCGCCTTCTATTGAAGTTGAAGTTCATGTGAGTCA
GGGGCTTCCCTCCCTGACTATTGTAGGCCTTCCTGAAGCTGCGGTACGTGAAAGTAAAGATCGGGTTCGCTCGGCGATCA
TTAATAGCGGCTTTCAGTTTCCCACCAAACGCCTTACTATTAACTTGGCTCCTGCCGATTTGCCCAAAGATGGATCACGT
CTGGATCTACCGATTGCCTTGGGGATTTTGGTTGCTTCGGGCCAGCTCCCTGAACAAAGTACAGAACAGATTGAATTTAT
TGGTGAACTGGCTCTAGATGGCTGCTTGCGTCCGGTAAGCGGCACACTGGCAATTGCCATGGCGTGTCAAAAAGTACAGC
ATCAGCTGATACTGGCAGAAGCAAATGCAATGGAAGCAGCGCAGCTCCCTGACTTTCAGGTCTACGGAGCACAGCACCTA
AAACAGGTTTGCCAGCATTTACTACAGCAACAGCCATTATTACCGGTTAAAGGTAAACTATCTGAAGCTGCTCAAGATTA
TAAACTGGATTTGGCAGATATTAAGGGGCAACTGCGCCCACGGCGTGCTTTGGAAATTGCAGCAGCAGGCGGTCACTCTC
TACTTTTTAAGGGCCCTCCTGGAACTGGAAAGACCCTGCTGGCTTCAAGGTTACCCAGCATTTTACCTCCGCCCAATGCC
CAGGAAAATCTTGAAGTTGCCAGTATCTATTCAATTGCCAATGTTCAGCATCCCTTTGGACAACGGCCTTTTCGGGCTCC
ACACCATACTGCATCTGCTATTGCGCTGGTCGGCGGCGGCTCGCAACCCAAGCCTGGTGAGATCACTCTGGCACATTTAG
GTGTTTTATTTCTAGATGAGCTTCCTGAATTTGACCGCAAAGTACTGGAGGTTTTACGTCAGCCACTCGAGTCTAAGGAA
ATTGTTATTTCTCGGGCTTCCCGGCAAATGACTTTTCCGGCCAACTTCCAGTTGGTAGCAGCTATGAATCCTTGTCCATG
TGGCTATGCATTTAATCAGGATAACCGTTGCCAGTGTTCAGCGGATGCAATTAAGCGCTATCAGAACCGTATTTCCGGTC
CATTGCTGGACCGGATTGATCTGCATATTGATGTGCCACCCTTGCAGGCGCATGAACTCCAGCAAACTACACCTGCTGAG
AATTCAGACACAGTCAGGAAACGTGTCATTTTAGCTTATGAACAGCAGCTCCAACGCCAGAGTTGCCTTAACCAGCTGCT
TTCCCCTAAACAGCTCGAACTGCATGCACAGCTGGACCAAAGCTCACTACGTATAATTGAAATGGCACAGCAACGACTCA
ATCTCTCTGCCCGTGCTTATCACCGGGTTTTACGTGTAGCCAGAACCATTGCTGATCTGGCACTTTCCAAAGAAATCCAG
ACAAGTCATTTAAGTGAAGCGCTTTCTTACCGCAGTCAGTCCTGA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-392)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-491)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

52

100

0.526
  comM Glaesserella parasuis strain SC1401

50.797

100

0.516
  comM Vibrio campbellii strain DS40M4

51.411

100

0.516
  comM Vibrio cholerae strain A1552

51.21

100

0.514
  comM Legionella pneumophila str. Paris

50.403

100

0.506
  comM Legionella pneumophila strain ERS1305867

50.403

100

0.506
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

46.72

100

0.476

Multiple sequence alignment