Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiC   Type   Regulator
Locus tag   ABZ559_RS00820 Genome accession   NZ_CP160400
Coordinates   174194..175693 (+) Length   499 a.a.
NCBI ID   WP_367006871.1    Uniprot ID   -
Organism   Streptococcus sp. ZY19097     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 169194..180693
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABZ559_RS00810 (ABZ559_00810) amiA 169708..171663 (+) 1956 WP_367007668.1 peptide ABC transporter substrate-binding protein Regulator
  ABZ559_RS00815 (ABZ559_00815) amiA 172151..174127 (+) 1977 WP_367006869.1 peptide ABC transporter substrate-binding protein Regulator
  ABZ559_RS00820 (ABZ559_00820) amiC 174194..175693 (+) 1500 WP_367006871.1 ABC transporter permease Regulator
  ABZ559_RS00825 (ABZ559_00825) amiD 175693..176619 (+) 927 WP_273415212.1 oligopeptide ABC transporter permease OppC Regulator
  ABZ559_RS00830 (ABZ559_00830) amiE 176628..177680 (+) 1053 WP_273415211.1 ABC transporter ATP-binding protein Regulator
  ABZ559_RS00835 (ABZ559_00835) amiF 177691..178617 (+) 927 WP_367006874.1 ATP-binding cassette domain-containing protein Regulator
  ABZ559_RS00840 (ABZ559_00840) - 178970..179338 (-) 369 WP_273415207.1 MerR family transcriptional regulator -

Sequence

Protein


Download         Length: 499 a.a.        Molecular weight: 55155.33 Da        Isoelectric Point: 10.1642

>NTDB_id=1020909 ABZ559_RS00820 WP_367006871.1 174194..175693(+) (amiC) [Streptococcus sp. ZY19097]
MKKYIFNRILRSLVSIFLVTTLTYAIVFTLVPRKLIFKQDPNYTKIAVTPDKKADYENTIYERMGYIDYLSTKELVAATK
KVDSKVTNEGSASDKKAYQAYLKSAGGNWKLQKFESGQYYATREIPIYERLWSFYSNLIVVDHPWKIQDSSNPNLKRYVR
FENDPAVGPALVGSGTKHKYLIYFNGKFPFIHQNIVTFNLGTSYPTFANIPVLQVITQGQGKTLAQEVKFPTGQTKVSSI
DIYSRTYKSPKQADARDISNFGKGDAYTATQNNYSEPSMISNSLKAGLIGVLLSYIIGLPVGLLMARYKDGIFDRFSTAT
VTFMLAMPSIASIYVIRFIGSKLFGLPDTFPLLGASDPRSYALPAIILGVLGAPGIAIWFRRYIVDLQGSDFVRFARAKG
LSEAEISRHHLFKNAMVPIVNGIPGAIVATIAGATLTEKVFAFPGMGKMLIDAIAAANNAMVVGLVFIFAVLAIFALLVG
DILMTVLDPRIKLSTKGGK

Nucleotide


Download         Length: 1500 bp        

>NTDB_id=1020909 ABZ559_RS00820 WP_367006871.1 174194..175693(+) (amiC) [Streptococcus sp. ZY19097]
ATGAAGAAATACATTTTTAACCGAATACTGAGATCGTTAGTCTCCATATTTTTAGTGACGACATTGACCTATGCTATCGT
CTTCACTCTTGTACCACGGAAGCTGATTTTTAAACAGGATCCGAACTATACCAAGATTGCCGTGACGCCAGATAAAAAGG
CTGATTACGAAAATACCATTTATGAAAGAATGGGCTATATTGATTACCTTAGTACTAAGGAATTGGTTGCTGCTACAAAA
AAAGTTGATTCAAAAGTTACCAATGAAGGAAGTGCATCTGATAAAAAGGCTTATCAAGCTTACCTCAAATCAGCAGGTGG
CAATTGGAAACTTCAAAAGTTTGAATCTGGTCAATATTACGCAACGCGTGAAATTCCTATTTATGAACGTCTTTGGAGTT
TTTACTCTAATCTGATTGTCGTTGACCATCCTTGGAAAATTCAAGACTCTTCAAATCCAAATTTGAAACGCTACGTTCGT
TTTGAAAATGATCCTGCCGTTGGCCCTGCCCTTGTTGGTTCAGGAACGAAGCATAAATATTTGATTTACTTTAACGGGAA
ATTCCCATTTATCCATCAAAATATCGTAACTTTTAATTTAGGAACATCTTATCCTACTTTTGCCAATATTCCTGTCTTGC
AAGTCATCACTCAAGGTCAAGGGAAAACATTGGCTCAAGAAGTGAAATTCCCAACTGGTCAAACCAAAGTATCATCAATT
GATATCTATTCACGGACCTATAAGTCACCTAAACAAGCTGATGCTCGAGACATCTCTAATTTTGGTAAGGGTGATGCCTA
TACGGCCACACAAAACAATTACTCCGAACCATCAATGATTTCAAACTCATTGAAGGCGGGTCTTATTGGGGTTCTTCTAT
CTTATATCATTGGTTTGCCAGTAGGTCTGTTGATGGCTCGTTATAAAGATGGAATCTTTGACCGCTTCTCTACTGCGACA
GTAACCTTTATGCTTGCTATGCCAAGTATTGCAAGTATTTACGTCATTCGTTTCATTGGTTCTAAACTTTTTGGATTGCC
AGATACGTTTCCACTTTTGGGAGCTAGCGATCCTCGTTCTTATGCTCTTCCAGCTATCATTTTGGGGGTTTTGGGAGCAC
CAGGTATTGCCATTTGGTTCCGTCGTTATATTGTTGACTTGCAAGGAAGTGATTTTGTTCGTTTTGCCCGAGCTAAAGGT
TTATCTGAAGCTGAGATTTCACGTCATCACCTCTTCAAAAATGCCATGGTTCCGATTGTCAATGGGATTCCAGGGGCTAT
TGTTGCAACAATTGCAGGAGCAACATTGACAGAAAAAGTTTTTGCTTTCCCTGGTATGGGTAAAATGCTGATTGATGCTA
TCGCTGCAGCAAATAATGCCATGGTTGTCGGTCTTGTCTTTATCTTTGCAGTATTGGCAATCTTCGCTCTTCTTGTTGGG
GATATCTTGATGACTGTCCTTGACCCACGTATCAAATTGTCTACAAAAGGAGGTAAATAA

Domains

Predicted by InterproScan.

Binding-protein-dependent transport system inner membrane component (BPD_transp_1)

(298-492)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiC Streptococcus salivarius strain HSISS4

63

100

0.631
  amiC Streptococcus thermophilus LMD-9

62.2

100

0.623
  amiC Streptococcus thermophilus LMG 18311

62.2

100

0.623

Multiple sequence alignment