Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiE   Type   Regulator
Locus tag   ABZ559_RS00830 Genome accession   NZ_CP160400
Coordinates   176628..177680 (+) Length   350 a.a.
NCBI ID   WP_273415211.1    Uniprot ID   -
Organism   Streptococcus sp. ZY19097     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 171628..182680
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABZ559_RS00815 (ABZ559_00815) amiA 172151..174127 (+) 1977 WP_367006869.1 peptide ABC transporter substrate-binding protein Regulator
  ABZ559_RS00820 (ABZ559_00820) amiC 174194..175693 (+) 1500 WP_367006871.1 ABC transporter permease Regulator
  ABZ559_RS00825 (ABZ559_00825) amiD 175693..176619 (+) 927 WP_273415212.1 oligopeptide ABC transporter permease OppC Regulator
  ABZ559_RS00830 (ABZ559_00830) amiE 176628..177680 (+) 1053 WP_273415211.1 ABC transporter ATP-binding protein Regulator
  ABZ559_RS00835 (ABZ559_00835) amiF 177691..178617 (+) 927 WP_367006874.1 ATP-binding cassette domain-containing protein Regulator
  ABZ559_RS00840 (ABZ559_00840) - 178970..179338 (-) 369 WP_273415207.1 MerR family transcriptional regulator -
  ABZ559_RS00845 (ABZ559_00845) - 179877..181067 (+) 1191 WP_367006875.1 argininosuccinate synthase -

Sequence

Protein


Download         Length: 350 a.a.        Molecular weight: 39032.74 Da        Isoelectric Point: 5.1471

>NTDB_id=1020911 ABZ559_RS00830 WP_273415211.1 176628..177680(+) (amiE) [Streptococcus sp. ZY19097]
MTNTNNVILSAQDVVVEFDVRDRVLTAIRNISIDLYEGEVLAVVGESGSGKSVLTKTFTGMLESNGRIANGSIKYRGQEL
TDLKSNADWEKIRGGKISTIFQDPMTSLDPIQTIGKQISEVIIKHQGKTKAEAKEMAIDYMKKVGIPEAERRYDEYPLQY
SGGMRQRIVIAIALACKPDVLICDEPTTALDVTIQAQIIDLLKNLQKEYNFTTIFITHDLGVVASIADKVAVMYAGDIVE
YGTVEEIFYDPKHPYTWSLLSSLPQLADEKGVLFSIPGTPPSLYTSIKGDAFAPRSRYAMKIDFEEDVPKFAVSETHWAK
TWLLHPDAPKVDKPEVIQDLHQKISQKMTN

Nucleotide


Download         Length: 1053 bp        

>NTDB_id=1020911 ABZ559_RS00830 WP_273415211.1 176628..177680(+) (amiE) [Streptococcus sp. ZY19097]
ATGACTAACACTAATAATGTAATCTTAAGTGCTCAAGATGTGGTCGTGGAATTTGATGTTCGTGACCGTGTCTTGACTGC
TATTCGTAATATTTCCATTGATCTCTACGAGGGTGAGGTTCTTGCCGTCGTTGGTGAATCAGGAAGCGGTAAATCTGTTT
TGACTAAAACTTTTACAGGAATGTTAGAATCTAACGGCCGTATTGCCAATGGTTCTATCAAGTATCGCGGTCAAGAATTG
ACAGATTTAAAATCCAATGCAGATTGGGAAAAAATTCGTGGTGGAAAAATTTCTACCATTTTCCAAGACCCAATGACCAG
CCTTGATCCGATTCAAACCATCGGAAAACAAATCTCTGAAGTTATTATCAAACACCAAGGTAAAACTAAGGCAGAAGCTA
AGGAAATGGCTATTGACTACATGAAAAAAGTTGGTATCCCTGAAGCTGAGAGACGTTATGACGAATATCCTCTTCAGTAT
TCTGGGGGGATGCGCCAACGTATTGTTATTGCGATTGCCTTGGCATGTAAGCCAGATGTCTTGATTTGTGATGAGCCAAC
AACGGCGCTTGATGTGACAATTCAAGCACAAATTATTGACTTGCTCAAAAATCTTCAAAAAGAATATAATTTTACAACAA
TCTTCATTACCCATGACCTTGGCGTGGTAGCAAGTATTGCTGATAAGGTTGCTGTTATGTATGCGGGTGATATTGTCGAA
TATGGAACGGTAGAAGAAATCTTTTATGATCCAAAACACCCCTACACTTGGAGTCTTCTGTCAAGTTTGCCACAGTTGGC
TGATGAAAAAGGTGTCCTTTTCTCAATTCCTGGAACACCACCTTCACTTTATACATCAATCAAAGGTGATGCTTTTGCAC
CACGTTCTCGCTATGCTATGAAGATTGATTTTGAAGAAGATGTTCCTAAATTTGCTGTTTCTGAAACACACTGGGCTAAG
ACTTGGTTGCTTCATCCTGATGCACCAAAGGTTGACAAACCAGAAGTTATTCAGGATTTGCACCAAAAAATTTCTCAAAA
AATGACCAACTAG

Domains

Predicted by InterproScan.

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(239-301)

ABC transporter (ABC_tran)

(29-187)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiE Streptococcus salivarius strain HSISS4

80.172

99.429

0.797
  amiE Streptococcus thermophilus LMG 18311

79.31

99.429

0.789
  amiE Streptococcus thermophilus LMD-9

79.31

99.429

0.789
  oppD Streptococcus mutans UA159

57.576

94.286

0.543

Multiple sequence alignment