Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiD   Type   Regulator
Locus tag   ABZ559_RS00825 Genome accession   NZ_CP160400
Coordinates   175693..176619 (+) Length   308 a.a.
NCBI ID   WP_273415212.1    Uniprot ID   -
Organism   Streptococcus sp. ZY19097     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 170693..181619
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABZ559_RS00815 (ABZ559_00815) amiA 172151..174127 (+) 1977 WP_367006869.1 peptide ABC transporter substrate-binding protein Regulator
  ABZ559_RS00820 (ABZ559_00820) amiC 174194..175693 (+) 1500 WP_367006871.1 ABC transporter permease Regulator
  ABZ559_RS00825 (ABZ559_00825) amiD 175693..176619 (+) 927 WP_273415212.1 oligopeptide ABC transporter permease OppC Regulator
  ABZ559_RS00830 (ABZ559_00830) amiE 176628..177680 (+) 1053 WP_273415211.1 ABC transporter ATP-binding protein Regulator
  ABZ559_RS00835 (ABZ559_00835) amiF 177691..178617 (+) 927 WP_367006874.1 ATP-binding cassette domain-containing protein Regulator
  ABZ559_RS00840 (ABZ559_00840) - 178970..179338 (-) 369 WP_273415207.1 MerR family transcriptional regulator -
  ABZ559_RS00845 (ABZ559_00845) - 179877..181067 (+) 1191 WP_367006875.1 argininosuccinate synthase -

Sequence

Protein


Download         Length: 308 a.a.        Molecular weight: 34726.70 Da        Isoelectric Point: 7.9033

>NTDB_id=1020910 ABZ559_RS00825 WP_273415212.1 175693..176619(+) (amiD) [Streptococcus sp. ZY19097]
MATIDKSKFEFVELDTYASETIDAPTYSYWKSVFRQFFSKKSTIFMLVLLIAIILMSFIYPMFANFDFNDVSDINDFSKR
YIWPNAQYWFGTDKNGQSLFDGVWYGARNSILISVIATLINIVLGIVIGALWGVSKAVDKVMIEVYNVISNLPFIMIVMI
LTYSLGSGFWNLILAFCITGWIGIAYSIRVQVMRYRDLEYNLASRTLGTSTVKIAIKNLLPQLVSVIVTLVSQMLPAYIS
YEAFLSAFGIGLPVTEPSLGRLIANYSSNLTTNAYLFWIPLTTLILVSLPLYIVGQNLADASDPRTHR

Nucleotide


Download         Length: 927 bp        

>NTDB_id=1020910 ABZ559_RS00825 WP_273415212.1 175693..176619(+) (amiD) [Streptococcus sp. ZY19097]
ATGGCTACGATTGACAAAAGTAAATTTGAATTTGTCGAATTAGACACTTATGCGTCTGAAACCATTGATGCTCCTACCTA
TTCTTATTGGAAATCGGTCTTCAGACAATTTTTCTCAAAGAAATCAACGATTTTTATGTTGGTTCTTCTGATTGCTATCA
TTTTGATGAGTTTTATCTATCCAATGTTTGCGAACTTTGACTTCAACGATGTTAGTGATATCAACGACTTTTCAAAACGT
TACATTTGGCCAAATGCGCAGTATTGGTTTGGTACTGATAAAAATGGTCAGTCACTCTTTGATGGTGTTTGGTATGGTGC
CCGCAACTCCATCTTGATTTCGGTCATTGCAACATTAATCAATATTGTCCTCGGTATCGTTATTGGTGCTCTTTGGGGTG
TGTCTAAGGCGGTTGATAAAGTCATGATTGAGGTTTACAATGTCATTTCAAACCTTCCTTTCATCATGATTGTTATGATT
TTGACCTACTCTCTTGGTTCAGGTTTCTGGAATTTGATCTTAGCTTTCTGTATCACGGGTTGGATTGGGATTGCCTATTC
TATTCGTGTGCAAGTCATGCGCTACCGTGATTTGGAGTATAACCTTGCAAGTCGTACTTTGGGAACCTCAACGGTTAAAA
TTGCTATCAAAAATCTCTTGCCACAATTGGTTTCAGTTATCGTAACCTTGGTATCACAAATGCTTCCAGCTTATATCTCT
TATGAAGCTTTCCTTTCCGCTTTTGGTATTGGTTTGCCAGTAACAGAGCCGAGTTTAGGACGTTTGATTGCTAATTATTC
ATCAAACTTGACAACAAATGCCTACCTTTTCTGGATTCCGTTGACAACTTTGATTTTGGTATCCTTGCCACTTTACATCG
TTGGTCAAAACCTTGCGGATGCCAGCGATCCACGTACACATAGATAG

Domains

Predicted by InterproScan.

N-terminal TM domain of oligopeptide transport permease C (OppC_N)

(28-72)

Binding-protein-dependent transport system inner membrane component (BPD_transp_1)

(125-306)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiD Streptococcus salivarius strain HSISS4

75

100

0.75
  amiD Streptococcus thermophilus LMG 18311

73.701

100

0.737
  amiD Streptococcus thermophilus LMD-9

73.701

100

0.737

Multiple sequence alignment