Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiF   Type   Regulator
Locus tag   ABZ559_RS00835 Genome accession   NZ_CP160400
Coordinates   177691..178617 (+) Length   308 a.a.
NCBI ID   WP_367006874.1    Uniprot ID   -
Organism   Streptococcus sp. ZY19097     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 172691..183617
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABZ559_RS00820 (ABZ559_00820) amiC 174194..175693 (+) 1500 WP_367006871.1 ABC transporter permease Regulator
  ABZ559_RS00825 (ABZ559_00825) amiD 175693..176619 (+) 927 WP_273415212.1 oligopeptide ABC transporter permease OppC Regulator
  ABZ559_RS00830 (ABZ559_00830) amiE 176628..177680 (+) 1053 WP_273415211.1 ABC transporter ATP-binding protein Regulator
  ABZ559_RS00835 (ABZ559_00835) amiF 177691..178617 (+) 927 WP_367006874.1 ATP-binding cassette domain-containing protein Regulator
  ABZ559_RS00840 (ABZ559_00840) - 178970..179338 (-) 369 WP_273415207.1 MerR family transcriptional regulator -
  ABZ559_RS00845 (ABZ559_00845) - 179877..181067 (+) 1191 WP_367006875.1 argininosuccinate synthase -
  ABZ559_RS00850 (ABZ559_00850) argH 181501..182883 (+) 1383 WP_367006876.1 argininosuccinate lyase -
  ABZ559_RS00855 (ABZ559_00855) rnpA 182974..183333 (+) 360 WP_018374946.1 ribonuclease P protein component -

Sequence

Protein


Download         Length: 308 a.a.        Molecular weight: 34747.97 Da        Isoelectric Point: 6.8599

>NTDB_id=1020912 ABZ559_RS00835 WP_367006874.1 177691..178617(+) (amiF) [Streptococcus sp. ZY19097]
MTEKLVEIKDLEISFGEGKKKFVAVKNANFFINKGETFSLVGESGSGKTTIGRAIIGLNETSAGDILYNGKRINGKKTRA
EQNELISKIQMIFQDPAASLNERATVDYIISEGLYNFKLFKDEADRKKKVTDMMAEVGLLAEHLTRYPHEFSGGQRQRIG
IARALVMEPEFIIADEPISALDVSVRAQVLNLLKKIQKEKGLTYLFIAHDLSVVRFISDRIAVIHKGVIVEVAETEELFR
NPIHPYTQSLLSAVPIPDPILERQKELIVYDQNQHDYSTDTPEMVEIKPGHFVWGNKAEVAKYREKLN

Nucleotide


Download         Length: 927 bp        

>NTDB_id=1020912 ABZ559_RS00835 WP_367006874.1 177691..178617(+) (amiF) [Streptococcus sp. ZY19097]
ATGACTGAAAAATTAGTCGAAATTAAAGATTTGGAAATTTCCTTCGGAGAAGGAAAAAAGAAATTCGTTGCAGTTAAGAA
TGCCAACTTCTTCATTAACAAGGGAGAAACCTTCTCACTTGTTGGTGAATCTGGTTCCGGGAAAACGACCATTGGTCGTG
CTATCATTGGTTTGAATGAAACTAGTGCGGGGGACATTCTCTATAATGGTAAGCGTATCAACGGAAAAAAAACGCGTGCT
GAGCAAAATGAATTGATTTCAAAAATTCAGATGATTTTCCAAGATCCTGCCGCAAGCTTGAATGAACGTGCAACGGTTGA
TTATATCATTTCAGAAGGTCTTTATAATTTCAAACTTTTTAAAGATGAAGCAGATCGCAAGAAAAAAGTTACAGATATGA
TGGCGGAAGTTGGGCTCTTAGCTGAACATTTGACACGTTACCCACATGAGTTCTCAGGTGGTCAACGTCAGCGTATCGGT
ATTGCTCGTGCATTGGTCATGGAACCAGAATTTATCATTGCAGACGAACCCATTTCTGCCTTGGATGTTTCCGTACGAGC
TCAAGTTCTCAACCTTTTGAAAAAAATTCAAAAAGAAAAAGGACTAACCTACCTTTTCATCGCTCATGATTTATCTGTTG
TGCGTTTTATTTCAGATCGTATTGCAGTTATTCATAAGGGAGTTATCGTTGAGGTGGCTGAAACGGAAGAACTCTTCCGA
AATCCAATCCATCCTTACACTCAATCTCTTTTATCAGCTGTACCAATTCCAGATCCAATCTTGGAACGTCAGAAAGAATT
GATCGTTTACGATCAAAATCAGCATGATTACTCAACTGATACTCCTGAAATGGTTGAAATCAAACCTGGGCACTTTGTCT
GGGGAAATAAAGCTGAAGTGGCTAAGTACCGTGAAAAACTAAACTAA

Domains

Predicted by InterproScan.

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(230-262)

ABC transporter (ABC_tran)

(25-178)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiF Streptococcus salivarius strain HSISS4

80.719

99.351

0.802
  amiF Streptococcus thermophilus LMG 18311

80.392

99.351

0.799
  amiF Streptococcus thermophilus LMD-9

80.065

99.351

0.795

Multiple sequence alignment