Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiA   Type   Regulator
Locus tag   ABZ559_RS00810 Genome accession   NZ_CP160400
Coordinates   169708..171663 (+) Length   651 a.a.
NCBI ID   WP_367007668.1    Uniprot ID   -
Organism   Streptococcus sp. ZY19097     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 164708..176663
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABZ559_RS00795 (ABZ559_00795) - 165174..166364 (-) 1191 WP_367006863.1 serine hydrolase -
  ABZ559_RS00800 (ABZ559_00800) pbp3 166445..167674 (-) 1230 WP_367006866.1 D-alanyl-D-alanine carboxypeptidase PBP3 -
  ABZ559_RS00805 (ABZ559_00805) pbp3 168228..169463 (-) 1236 WP_367006867.1 D-alanyl-D-alanine carboxypeptidase PBP3 -
  ABZ559_RS00810 (ABZ559_00810) amiA 169708..171663 (+) 1956 WP_367007668.1 peptide ABC transporter substrate-binding protein Regulator
  ABZ559_RS00815 (ABZ559_00815) amiA 172151..174127 (+) 1977 WP_367006869.1 peptide ABC transporter substrate-binding protein Regulator
  ABZ559_RS00820 (ABZ559_00820) amiC 174194..175693 (+) 1500 WP_367006871.1 ABC transporter permease Regulator
  ABZ559_RS00825 (ABZ559_00825) amiD 175693..176619 (+) 927 WP_273415212.1 oligopeptide ABC transporter permease OppC Regulator

Sequence

Protein


Download         Length: 651 a.a.        Molecular weight: 72954.03 Da        Isoelectric Point: 4.7783

>NTDB_id=1020907 ABZ559_RS00810 WP_367007668.1 169708..171663(+) (amiA) [Streptococcus sp. ZY19097]
MRKKLLVLGVASLSFLALTACGSNKNSSSEKVYQYVYATDPDSLDYIVNFNATTSDLTTNGVDGLLENDQYGNLVPSLAK
DWTVSKDGLTYTYKLRKGVKWYTSEGEEYAEVTANDFVAGIKHAVEGESSALYLIQDSIKGLDDYVKGKTKDFSTVGVKA
LDDYTVQYTLNNPESFWNSKTTAQILFPVNEEFLESKGKKFGTTDPSSILYNGAYFLKNLTAKSEISFEKNPNYWDAKNV
HIDQIKLIYNDGSETESIYKNFDDGVYSALSLNPNDSSYKSAAKKYDKNIVFGLQDSTVYSLHFNLNRTANQFTKKTSDS
QKNDTKTAILNKDFRQAIGFALNREAFNAQKVGEQAASKSLRNLVVPPTFVQIGTKDFGTAVKEELDNYGDVWKDVNLED
AQDGFYNPEKAKKSFEKAKEVLQSEGVTFPIHLDISVDQTYSVGVNQANSLKQSLEASLGKDNVVIDINQLTTDDYNNTT
YFANNAEQKDWDLAIEGWSADYDDPSTFLDIYRPTDGSYIHYVGLNPGQNADIVHQVGLDVFEDYLDEAVKETNDLQKRY
TIYAKAQAAFTDSAVMIPIFTRGGSPIVTKLKPYSSAFSWTGTKGNSSFKYKKLLDEPVTAKEFYKAREKWLKEKAKSNA
KYEEELADHLE

Nucleotide


Download         Length: 1956 bp        

>NTDB_id=1020907 ABZ559_RS00810 WP_367007668.1 169708..171663(+) (amiA) [Streptococcus sp. ZY19097]
ATGAGGAAAAAACTTCTTGTTTTAGGAGTTGCTAGTTTATCTTTTCTGGCTTTGACAGCTTGCGGCAGCAATAAGAATAG
TTCAAGTGAGAAAGTGTATCAATACGTTTATGCAACCGATCCAGATTCGCTGGATTATATTGTCAATTTTAATGCGACAA
CTTCAGATCTCACTACAAATGGAGTTGACGGGTTATTAGAAAATGACCAATACGGAAACTTAGTCCCATCGCTAGCGAAA
GATTGGACAGTTTCAAAAGATGGATTGACTTACACCTACAAACTCAGAAAAGGTGTCAAATGGTACACTTCTGAGGGAGA
AGAGTATGCTGAAGTTACAGCCAATGATTTTGTGGCAGGTATTAAACATGCAGTGGAGGGGGAATCCTCAGCGCTTTATC
TCATTCAAGATTCCATCAAGGGCTTGGACGATTATGTCAAAGGGAAAACGAAAGATTTTTCAACTGTTGGTGTCAAAGCC
CTGGATGATTATACCGTTCAATATACGCTAAATAATCCAGAAAGTTTTTGGAATTCTAAAACGACGGCACAGATTCTCTT
TCCTGTAAACGAAGAATTTCTCGAATCCAAAGGGAAAAAATTTGGGACAACGGATCCTTCAAGTATCCTATATAATGGTG
CCTACTTCTTGAAAAATCTAACTGCTAAGTCTGAAATTTCTTTTGAGAAGAACCCTAATTACTGGGATGCGAAAAATGTT
CACATTGACCAAATCAAATTGATTTACAATGATGGTTCTGAAACTGAGTCCATCTACAAAAATTTTGATGACGGGGTGTA
TTCGGCTCTAAGTTTGAATCCTAATGATTCAAGTTACAAGTCAGCGGCTAAGAAGTATGATAAAAATATTGTTTTTGGAC
TTCAAGATAGCACTGTTTATTCGCTGCATTTTAATTTGAATCGTACGGCTAACCAATTTACCAAAAAAACATCAGACAGT
CAGAAAAATGATACGAAAACAGCTATCTTGAATAAAGATTTCCGTCAAGCAATCGGCTTTGCTCTTAATCGTGAGGCTTT
TAATGCTCAAAAGGTTGGAGAACAAGCCGCTAGTAAGTCGCTCCGTAATTTAGTAGTTCCTCCAACATTTGTTCAAATTG
GCACCAAAGATTTTGGAACCGCGGTCAAAGAAGAACTTGACAATTATGGAGATGTTTGGAAAGATGTCAATCTTGAAGAT
GCACAAGATGGATTTTATAATCCAGAAAAAGCAAAAAAATCATTTGAAAAAGCTAAGGAAGTTCTTCAATCAGAAGGTGT
TACCTTCCCGATTCACTTGGATATTTCTGTTGACCAAACTTATTCGGTGGGTGTCAATCAAGCAAACTCTCTCAAACAAT
CCCTAGAAGCTTCTCTTGGGAAAGACAATGTTGTGATTGATATCAATCAGTTGACTACTGATGATTATAATAACACGACC
TATTTTGCAAATAATGCAGAGCAAAAGGATTGGGATTTAGCTATTGAGGGTTGGTCAGCAGACTATGATGATCCTTCTAC
TTTCCTTGATATTTATAGACCAACAGATGGCAGCTACATTCACTATGTTGGGCTAAATCCTGGTCAGAATGCAGATATTG
TTCACCAAGTTGGATTGGATGTTTTTGAAGATTATCTGGATGAAGCCGTTAAGGAAACTAATGATCTGCAAAAACGTTAT
ACAATATATGCAAAAGCACAAGCAGCCTTCACAGACAGCGCGGTTATGATTCCAATTTTTACACGTGGCGGAAGTCCAAT
TGTTACTAAACTCAAGCCTTACTCAAGTGCTTTCTCATGGACAGGGACAAAAGGGAACTCTAGTTTCAAATATAAGAAAC
TTCTTGATGAACCTGTCACCGCAAAAGAATTTTACAAAGCGCGTGAGAAATGGTTGAAAGAAAAAGCCAAATCAAATGCC
AAATATGAAGAAGAACTAGCAGATCACTTAGAATAG

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(74-513)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiA Streptococcus salivarius strain HSISS4

53.282

100

0.536
  amiA3 Streptococcus thermophilus LMG 18311

51.45

100

0.518
  amiA3 Streptococcus thermophilus LMD-9

51.45

100

0.518

Multiple sequence alignment