Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   ABUE11_RS01055 Genome accession   NZ_CP160388
Coordinates   230912..232453 (-) Length   513 a.a.
NCBI ID   WP_367067136.1    Uniprot ID   -
Organism   Oryzisolibacter sp. LB2S     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 225912..237453
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABUE11_RS01035 bioB 228493..229557 (+) 1065 WP_367067133.1 biotin synthase BioB -
  ABUE11_RS01040 - 229603..229908 (-) 306 Protein_207 IS110 family transposase -
  ABUE11_RS01045 - 230059..230475 (+) 417 WP_367067134.1 ester cyclase -
  ABUE11_RS01050 - 230543..230743 (-) 201 Protein_209 hypothetical protein -
  ABUE11_RS01055 comM 230912..232453 (-) 1542 WP_367067136.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  ABUE11_RS01060 - 232590..233321 (+) 732 WP_367067138.1 TorF family putative porin -
  ABUE11_RS01065 glnK 233342..233680 (+) 339 WP_367067139.1 P-II family nitrogen regulator -
  ABUE11_RS01070 amt 233703..235118 (+) 1416 WP_367067141.1 ammonium transporter -
  ABUE11_RS01075 glcE 235271..236392 (+) 1122 WP_367067142.1 glycolate oxidase subunit GlcE -

Sequence

Protein


Download         Length: 513 a.a.        Molecular weight: 54052.91 Da        Isoelectric Point: 8.1098

>NTDB_id=1020748 ABUE11_RS01055 WP_367067136.1 230912..232453(-) (comM) [Oryzisolibacter sp. LB2S]
MSLALVQSRALLGLQAPSVTVEVHLANGLPSFALVGLADVEVKEARERVRSALQNAGLEFPANKKITVNLAPADLPKDSG
RFDLPIALGILAASGQIDPARLGGWEFAGELSLSGQLRPVRGALATSLALRAQQLRLVLPPGSAEEAALVPGAEIWRARH
LLDVVRHFLPAGSTPEPEPEGDDDGWRRMVAAPPAVHADGPDLADVKGQAAAKRALEIAATGAHGLLLVGPPGSGKSMLA
QRFAGLLPPMQVEQALESAAIASLAGRFTPQQWMQRPTASPHHSCSAVALVGGGSPPRPGEISLAHEGVLFLDEFPEFAR
SALEALREPLESGRITIARAAQRAEFPARFQLVAAMNPCPCGFAGSTQRACRCTPDQVARYQGKLSGPLLDRIDLHVEVP
QLPATELLGAPAGESSAAVRERVAQAHERALKRQGMPNQALQGRQLDEVVALDEAAARFLQTAATRLAWSARGTHRALKV
ARTIADLAGSGPVSVAHVAEAIQYRRVLRAQGS

Nucleotide


Download         Length: 1542 bp        

>NTDB_id=1020748 ABUE11_RS01055 WP_367067136.1 230912..232453(-) (comM) [Oryzisolibacter sp. LB2S]
ATGAGTCTTGCTTTGGTGCAAAGCCGCGCCCTGCTGGGCCTGCAGGCGCCCAGCGTCACCGTGGAGGTGCATCTGGCCAA
CGGCCTGCCGAGCTTTGCGCTCGTGGGCCTGGCCGATGTCGAGGTCAAGGAGGCGCGCGAGCGCGTGCGCTCGGCGCTGC
AGAACGCGGGCCTGGAGTTCCCCGCGAACAAGAAGATCACCGTGAACCTGGCGCCGGCCGACCTGCCCAAGGACTCGGGG
CGCTTCGACCTGCCGATCGCGCTGGGCATATTGGCCGCCAGCGGGCAGATTGACCCGGCGCGCTTGGGCGGCTGGGAGTT
TGCGGGCGAGCTGTCGCTGTCGGGCCAACTACGCCCGGTGCGCGGCGCCCTGGCCACCAGCCTGGCGCTGCGCGCGCAGC
AGCTGCGCCTGGTGCTGCCGCCGGGCAGCGCCGAGGAGGCGGCCCTGGTGCCCGGCGCCGAGATCTGGCGCGCGCGCCAC
CTGCTGGACGTGGTGCGGCATTTTCTGCCCGCGGGCAGCACGCCCGAACCCGAACCCGAGGGCGACGACGACGGCTGGCG
GCGCATGGTGGCCGCGCCGCCCGCAGTCCATGCCGATGGCCCCGATCTCGCCGACGTCAAGGGCCAGGCCGCCGCCAAGC
GCGCGCTGGAGATCGCGGCCACAGGAGCACATGGGCTGCTGCTTGTCGGCCCGCCGGGCTCGGGCAAGTCCATGCTCGCG
CAGCGCTTTGCTGGCCTGCTGCCGCCCATGCAGGTGGAGCAGGCGCTCGAGAGCGCGGCCATCGCCAGCCTGGCCGGGCG
CTTCACACCGCAGCAGTGGATGCAACGCCCGACGGCCAGCCCGCACCACAGCTGCAGCGCCGTGGCCCTGGTGGGCGGGG
GCTCGCCGCCGCGGCCGGGCGAGATCTCGCTCGCGCACGAGGGCGTGCTGTTCCTCGACGAGTTCCCGGAGTTCGCGCGC
AGCGCGCTCGAGGCCCTGCGCGAGCCGCTCGAGAGCGGGCGCATCACCATCGCGCGCGCGGCGCAGCGCGCCGAGTTCCC
GGCGCGCTTTCAGCTCGTCGCCGCCATGAACCCCTGCCCCTGCGGCTTTGCCGGCTCCACCCAGCGCGCCTGCCGCTGCA
CACCCGACCAGGTGGCGCGCTACCAGGGCAAATTGAGCGGCCCGCTGCTCGACCGCATAGACCTGCATGTGGAGGTGCCG
CAGCTGCCGGCCACGGAGCTGCTGGGTGCGCCCGCCGGGGAATCGAGCGCCGCCGTGCGCGAGCGCGTGGCCCAGGCGCA
CGAGCGTGCGCTCAAGCGCCAGGGCATGCCCAACCAGGCACTGCAGGGCCGTCAGCTCGACGAGGTGGTGGCGCTCGACG
AGGCCGCCGCGCGCTTTCTGCAGACGGCCGCCACACGCCTGGCCTGGTCGGCGCGCGGCACGCACCGCGCCCTCAAGGTG
GCGCGCACGATTGCCGACCTCGCGGGCTCGGGCCCGGTGAGCGTGGCTCATGTGGCCGAGGCCATACAGTACCGGCGGGT
GCTGCGTGCACAGGGCAGTTGA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(202-406)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(413-505)

Subunit ChlI of Mg-chelatase (ChlI)

(21-140)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

51.462

100

0.515
  comM Vibrio campbellii strain DS40M4

50.969

100

0.513
  comM Haemophilus influenzae Rd KW20

50.973

100

0.511
  comM Glaesserella parasuis strain SC1401

49.609

99.805

0.495
  comM Legionella pneumophila str. Paris

48.054

100

0.481
  comM Legionella pneumophila strain ERS1305867

48.054

100

0.481
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

42.802

100

0.429

Multiple sequence alignment