Detailed information NTG1020708

Bioinformatically predicted

Overview

• Name: comYD
• Type: Machinery gene
• Locus tag: AB1F71_RS09180
• Genome accession: NZ_CP160386
• Coordinates: 1852633..1853037 (-)
• Length: 134 a.a.
• NCBI ID: WP_002263438.1
• Uniprot ID: -
• Organism: Streptococcus mutans strain UA159 ykuR deletion
• Function: dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1847633..1858037

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AB1F71_RS09145 (AB1F71_09145)	-	1848091..1848531 (-)	441	WP_002263445.1	hypothetical protein	-
AB1F71_RS09150 (AB1F71_09150)	-	1848500..1848745 (-)	246	WP_002263444.1	helix-turn-helix transcriptional regulator	-
AB1F71_RS09155 (AB1F71_09155)	-	1849314..1850513 (-)	1200	WP_002263443.1	acetate kinase	-
AB1F71_RS09160 (AB1F71_09160)	comYH	1850572..1851525 (-)	954	WP_002263442.1	class I SAM-dependent methyltransferase	Machinery gene
AB1F71_RS09165 (AB1F71_09165)	comYG	1851580..1851969 (-)	390	WP_002263441.1	competence type IV pilus minor pilin ComGG	Machinery gene
AB1F71_RS09170 (AB1F71_09170)	comYF	1851947..1852381 (-)	435	WP_002263440.1	competence type IV pilus minor pilin ComGF	Machinery gene
AB1F71_RS09175 (AB1F71_09175)	comYE	1852368..1852661 (-)	294	WP_002263439.1	competence type IV pilus minor pilin ComGE	Machinery gene
AB1F71_RS09180 (AB1F71_09180)	comYD	1852633..1853037 (-)	405	WP_002263438.1	competence type IV pilus minor pilin ComGD	Machinery gene
AB1F71_RS09185 (AB1F71_09185)	comYC	1853024..1853338 (-)	315	WP_002263437.1	competence type IV pilus major pilin ComGC	Machinery gene
AB1F71_RS09190 (AB1F71_09190)	comYB	1853338..1854369 (-)	1032	WP_255262721.1	competence type IV pilus assembly protein ComGB	Machinery gene
AB1F71_RS09195 (AB1F71_09195)	comYA	1854305..1855246 (-)	942	WP_002263435.1	competence type IV pilus ATPase ComGA	Machinery gene
AB1F71_RS09200 (AB1F71_09200)	-	1855376..1855759 (-)	384	WP_002263434.1	DUF1033 family protein	-

Sequence

Protein

• Length: 134 a.a.
• Molecular weight: 15444.77 Da
• Isoelectric Point: 9.5619

>NTDB_id=1020708 AB1F71_RS09180 WP_002263438.1 1852633..1853037(-) (comYD) [Streptococcus mutans strain UA159 ykuR deletion]
MSRIKAFTLIESLVTLAITSFLILSFSGSITQTFAKVEERLFFLSFEHLYRDTQKLSVYQRQDMTLILKSEYISNGVEVL
KIPKDVKLERNKTLHFDQAGGNSSLEKLVFQTSDEKRVTYQLYIGSGQYKKTES

Nucleotide

• Length: 405 bp

>NTDB_id=1020708 AB1F71_RS09180 WP_002263438.1 1852633..1853037(-) (comYD) [Streptococcus mutans strain UA159 ykuR deletion]
ATGTCGCGAATTAAAGCTTTTACGCTTATAGAAAGTTTAGTGACTTTGGCAATTACTAGTTTTTTGATTTTAAGCTTTTC
AGGTAGTATAACTCAAACGTTTGCCAAAGTAGAAGAGCGTCTCTTTTTTCTTTCTTTTGAACATCTTTACCGTGACACGC
AAAAACTTAGTGTTTATCAAAGACAAGATATGACTTTAATATTAAAAAGCGAATATATCTCAAATGGTGTTGAAGTACTT
AAAATCCCTAAGGATGTCAAACTAGAGAGGAATAAAACTTTGCACTTTGATCAGGCAGGAGGAAATTCTTCTTTAGAAAA
ACTTGTTTTTCAAACATCTGATGAAAAAAGAGTTACTTATCAATTATATATAGGAAGTGGTCAGTATAAAAAAACAGAAA
GTTAA

Domains

Predicted by InterproScan.

• Prokaryotic N-terminal methylation motif (N_methyl) (1-25)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comYD	Streptococcus mutans UA140	100	100	1
comYD	Streptococcus mutans UA159	100	100	1
comYD	Streptococcus gordonii str. Challis substr. CH1	50.388	96.269	0.485
comGD/cglD	Streptococcus mitis NCTC 12261	49.612	96.269	0.478
comGD/cglD	Streptococcus pneumoniae Rx1	49.219	95.522	0.47
comGD/cglD	Streptococcus pneumoniae D39	49.219	95.522	0.47
comGD/cglD	Streptococcus pneumoniae R6	49.219	95.522	0.47
comGD/cglD	Streptococcus pneumoniae TIGR4	48.438	95.522	0.463
comGD/cglD	Streptococcus mitis SK321	48.438	95.522	0.463
comGD	Lactococcus lactis subsp. cremoris KW2	39.394	98.507	0.388