Detailed information    

insolico Bioinformatically predicted

Overview

Name   comYH   Type   Machinery gene
Locus tag   AB1F71_RS09160 Genome accession   NZ_CP160386
Coordinates   1850572..1851525 (-) Length   317 a.a.
NCBI ID   WP_002263442.1    Uniprot ID   Q8DS56
Organism   Streptococcus mutans strain UA159 ykuR deletion     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1845572..1856525
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB1F71_RS09135 (AB1F71_09135) proC 1846521..1847291 (+) 771 WP_002263447.1 pyrroline-5-carboxylate reductase -
  AB1F71_RS09140 (AB1F71_09140) - 1847376..1848038 (-) 663 WP_002263446.1 type II CAAX endopeptidase family protein -
  AB1F71_RS09145 (AB1F71_09145) - 1848091..1848531 (-) 441 WP_002263445.1 hypothetical protein -
  AB1F71_RS09150 (AB1F71_09150) - 1848500..1848745 (-) 246 WP_002263444.1 helix-turn-helix transcriptional regulator -
  AB1F71_RS09155 (AB1F71_09155) - 1849314..1850513 (-) 1200 WP_002263443.1 acetate kinase -
  AB1F71_RS09160 (AB1F71_09160) comYH 1850572..1851525 (-) 954 WP_002263442.1 class I SAM-dependent methyltransferase Machinery gene
  AB1F71_RS09165 (AB1F71_09165) comYG 1851580..1851969 (-) 390 WP_002263441.1 competence type IV pilus minor pilin ComGG Machinery gene
  AB1F71_RS09170 (AB1F71_09170) comYF 1851947..1852381 (-) 435 WP_002263440.1 competence type IV pilus minor pilin ComGF Machinery gene
  AB1F71_RS09175 (AB1F71_09175) comYE 1852368..1852661 (-) 294 WP_002263439.1 competence type IV pilus minor pilin ComGE Machinery gene
  AB1F71_RS09180 (AB1F71_09180) comYD 1852633..1853037 (-) 405 WP_002263438.1 competence type IV pilus minor pilin ComGD Machinery gene
  AB1F71_RS09185 (AB1F71_09185) comYC 1853024..1853338 (-) 315 WP_002263437.1 competence type IV pilus major pilin ComGC Machinery gene
  AB1F71_RS09190 (AB1F71_09190) comYB 1853338..1854369 (-) 1032 WP_255262721.1 competence type IV pilus assembly protein ComGB Machinery gene
  AB1F71_RS09195 (AB1F71_09195) comYA 1854305..1855246 (-) 942 WP_002263435.1 competence type IV pilus ATPase ComGA Machinery gene
  AB1F71_RS09200 (AB1F71_09200) - 1855376..1855759 (-) 384 WP_002263434.1 DUF1033 family protein -

Sequence

Protein


Download         Length: 317 a.a.        Molecular weight: 36272.56 Da        Isoelectric Point: 5.2379

>NTDB_id=1020704 AB1F71_RS09160 WP_002263442.1 1850572..1851525(-) (comYH) [Streptococcus mutans strain UA159 ykuR deletion]
MDFEKIEAAYNLLLDNCQRLETQLHTHLYDALIEQNACYLGAEGADDFIKENNKKLRQLNLSKEEWRRSFQFIFIKATQS
QQLQSNHQFTPDSIGFIILYLLEGLTNKSQLDIIEIGSGTGNLAETIVNNSSKSIDYMGIEVDDLLIDLSASIADVLDSS
VHFVQEDAVRPQILKESDIIISDLPVGFYPNDKIAQRYQVAAKLGHTYAHHLLMEQSLKYLKKEGLAIFLAPVDLLTSEQ
SPLLKKWLQNNVTILAVISLPEAIFKQKSNIKSIFVLKKQSQQSLESFVYPLTDLQDPEVLRRFMKNFKKWKEDNVF

Nucleotide


Download         Length: 954 bp        

>NTDB_id=1020704 AB1F71_RS09160 WP_002263442.1 1850572..1851525(-) (comYH) [Streptococcus mutans strain UA159 ykuR deletion]
ATGGATTTTGAAAAAATAGAAGCTGCCTATAACTTACTGTTAGATAATTGTCAAAGGCTGGAAACTCAACTTCATACTCA
CCTTTATGATGCCTTAATTGAGCAAAATGCTTGCTATCTAGGTGCTGAAGGTGCTGATGATTTTATTAAAGAAAATAATA
AAAAACTGCGTCAGCTTAATCTAAGTAAAGAGGAGTGGCGTCGTAGTTTTCAATTTATTTTTATTAAGGCTACTCAAAGT
CAGCAATTACAGTCAAATCACCAATTTACACCAGATAGTATTGGTTTTATTATTCTTTATTTATTGGAAGGTTTAACAAA
TAAGAGTCAGTTAGACATCATTGAAATTGGTTCTGGGACAGGAAATCTTGCAGAGACTATTGTGAATAACAGTTCAAAAA
GCATTGATTATATGGGGATTGAGGTTGACGATCTGTTAATTGATTTATCAGCAAGTATTGCCGATGTATTGGATTCTTCT
GTGCATTTTGTTCAAGAAGATGCAGTGCGGCCTCAGATTTTAAAAGAAAGTGATATCATTATCAGTGATCTGCCAGTTGG
CTTTTATCCCAATGATAAAATTGCTCAGCGTTATCAGGTTGCAGCCAAGTTAGGACATACTTATGCACATCATCTTTTGA
TGGAGCAATCGCTTAAGTATTTAAAAAAAGAGGGACTTGCTATTTTTTTAGCGCCAGTGGATCTTTTAACTAGTGAGCAG
AGTCCTTTGCTTAAAAAGTGGTTACAGAACAATGTAACTATTTTAGCCGTTATTTCTTTACCTGAGGCAATTTTTAAACA
GAAAAGTAATATAAAGTCAATCTTTGTCTTAAAGAAACAATCGCAACAAAGTTTGGAAAGTTTTGTCTATCCTTTGACAG
ATTTACAAGACCCCGAAGTTTTAAGACGATTTATGAAAAATTTTAAAAAGTGGAAGGAAGATAATGTCTTTTAA

Domains

Predicted by InterproScan.

N-6 DNA Methylase (N6_Mtase)

(77-283)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q8DS56

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comYH Streptococcus mutans UA159

100

100

1
  comYH Streptococcus mutans UA140

99.369

100

0.994

Multiple sequence alignment