Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   DQM55_RS08890 Genome accession   NZ_LS483364
Coordinates   1782873..1783661 (-) Length   262 a.a.
NCBI ID   WP_002896308.1    Uniprot ID   A3CLF4
Organism   Streptococcus sanguinis strain NCTC11086     
Function   repress the expression of comX (predicted from homology)   
Competence regulation

Genomic Context

Location: 1777873..1788661
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQM55_RS08870 (NCTC11086_01808) gatA 1778296..1779762 (-) 1467 WP_111676290.1 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatA -
  DQM55_RS08875 (NCTC11086_01809) gatC 1779762..1780064 (-) 303 WP_002896305.1 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatC -
  DQM55_RS08880 (NCTC11086_01810) aspS 1780268..1782004 (-) 1737 WP_111676292.1 aspartate--tRNA ligase -
  DQM55_RS08885 - 1782316..1782873 (-) 558 WP_111676294.1 cysteine hydrolase family protein -
  DQM55_RS08890 (NCTC11086_01812) codY 1782873..1783661 (-) 789 WP_002896308.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  DQM55_RS08895 (NCTC11086_01813) - 1783864..1786449 (-) 2586 WP_111676296.1 SEC10/PgrA surface exclusion domain-containing protein -
  DQM55_RS08900 (NCTC11086_01814) - 1786771..1787985 (-) 1215 WP_009659361.1 pyridoxal phosphate-dependent aminotransferase -

Sequence

Protein


Download         Length: 262 a.a.        Molecular weight: 29683.93 Da        Isoelectric Point: 4.8617

>NTDB_id=1020701 DQM55_RS08890 WP_002896308.1 1782873..1783661(-) (codY) [Streptococcus sanguinis strain NCTC11086]
MADLLEKTRKITSILKRSEEQMQEDLPYNAITRQLADIIHCNACIINSKGRLLGYFMRYKTNNDRVEAFFQDKNFPEEYV
QEANLVYETEANLPVTHDLTIFPVETKDDFPDGLTTIAPIHVSGIRLGSLIIWRNDKEFADDDLILVEIASTVVGIQLLN
FQREEDEKNIRRRTAVTMAVNTLSYSELRAVSAILGELNGNEGQLTASVIADRIGITRSVIVNALRKLESAGIIESRSLG
MKGTYLKVLIPDVFDEIKKRDY

Nucleotide


Download         Length: 789 bp        

>NTDB_id=1020701 DQM55_RS08890 WP_002896308.1 1782873..1783661(-) (codY) [Streptococcus sanguinis strain NCTC11086]
ATGGCCGATTTACTAGAAAAAACACGAAAAATTACGTCTATTCTGAAGCGCTCGGAAGAGCAGATGCAGGAAGATTTGCC
CTATAATGCTATTACGCGTCAGTTGGCTGATATTATCCACTGCAATGCCTGCATTATCAATAGCAAAGGACGTCTTCTAG
GCTATTTCATGCGCTACAAGACCAATAATGACCGTGTAGAAGCTTTTTTTCAAGATAAGAATTTCCCAGAGGAGTATGTC
CAAGAAGCCAACCTGGTTTATGAAACGGAGGCTAATCTGCCGGTTACGCATGATTTGACGATTTTTCCGGTAGAGACCAA
GGATGATTTTCCAGATGGCCTGACTACTATTGCTCCCATTCATGTTTCAGGGATTCGTTTGGGCTCATTGATTATCTGGC
GTAATGACAAGGAATTTGCGGACGATGATCTGATTTTGGTTGAGATTGCCAGCACAGTGGTTGGTATCCAGCTGCTTAAC
TTCCAGCGGGAAGAGGATGAGAAAAATATCCGCCGCCGGACAGCTGTGACCATGGCGGTCAATACTCTGTCTTACTCAGA
ACTGAGAGCTGTTTCAGCAATTTTGGGAGAGCTGAATGGCAATGAAGGCCAGCTGACAGCATCTGTCATTGCTGACCGTA
TCGGGATTACCCGCTCAGTGATTGTTAATGCCTTGCGTAAGCTGGAAAGTGCTGGGATTATTGAAAGCCGCTCACTGGGG
ATGAAGGGAACTTATCTGAAAGTCCTGATTCCAGATGTCTTTGATGAAATTAAAAAGAGGGACTACTAA

Domains

Predicted by InterProScan.

CodY GAF-like domain (CodY)

(4-182)

CodY helix-turn-helix domain (HTH_CodY)

(202-258)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A3CLF4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Lactococcus lactis subsp. lactis strain DGCC12653

62.595

100

0.626
  codY Bacillus subtilis subsp. subtilis str. 168

51.22

93.893

0.481

Multiple sequence alignment