Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   DQM55_RS02745 Genome accession   NZ_LS483364
Coordinates   532393..532875 (-) Length   160 a.a.
NCBI ID   WP_002893508.1    Uniprot ID   -
Organism   Streptococcus sanguinis strain NCTC11086     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 527393..537875
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQM55_RS02715 (NCTC11086_00540) - 528030..528557 (+) 528 WP_111675391.1 DUF1273 domain-containing protein -
  DQM55_RS02720 (NCTC11086_00541) gpsB 528629..528991 (+) 363 WP_050540601.1 cell division regulator GpsB -
  DQM55_RS02735 (NCTC11086_00543) - 529666..530820 (+) 1155 WP_111675392.1 THUMP domain-containing class I SAM-dependent RNA methyltransferase -
  DQM55_RS02740 (NCTC11086_00544) - 530833..532290 (+) 1458 WP_111675393.1 cell division site-positioning protein MapZ family protein -
  DQM55_RS02745 (NCTC11086_00545) luxS 532393..532875 (-) 483 WP_002893508.1 S-ribosylhomocysteine lyase Regulator
  DQM55_RS02750 (NCTC11086_00546) - 533240..534853 (+) 1614 WP_002893506.1 ribonuclease Y -
  DQM55_RS02755 (NCTC11086_00547) gmk 535040..535672 (+) 633 WP_002893505.1 guanylate kinase -
  DQM55_RS02760 (NCTC11086_00548) rpoZ 535698..536012 (+) 315 WP_002893503.1 DNA-directed RNA polymerase subunit omega -

Sequence

Protein


Download         Length: 160 a.a.        Molecular weight: 17887.39 Da        Isoelectric Point: 4.8528

>NTDB_id=1020649 DQM55_RS02745 WP_002893508.1 532393..532875(-) (luxS) [Streptococcus sanguinis strain NCTC11086]
MSKEVIVESFELDHTIVKAPYVRLIGEETGPKGDIISNFDIRLVQPNEDSIPTAGLHTIEHLLAMLIRKRIDGMIDCSPF
GCRTGFHMIMWGQHSSSQIAQVIKSCLEEIAESTSWEDVPGTTIESCGNYKDHSLFSAKEWAKLILSQGISDDAFERHVI

Nucleotide


Download         Length: 483 bp        

>NTDB_id=1020649 DQM55_RS02745 WP_002893508.1 532393..532875(-) (luxS) [Streptococcus sanguinis strain NCTC11086]
ATGTCTAAAGAAGTTATCGTCGAAAGCTTTGAGCTGGATCACACCATTGTCAAAGCGCCTTATGTCCGCCTTATCGGAGA
AGAAACTGGCCCTAAAGGCGACATCATTTCCAATTTTGATATCCGTCTGGTTCAGCCGAATGAAGATTCAATCCCGACAG
CCGGTCTGCATACTATCGAGCATTTGCTGGCCATGCTGATTCGCAAGCGCATTGATGGTATGATTGATTGCTCACCTTTT
GGCTGTCGCACTGGTTTTCACATGATTATGTGGGGCCAACACAGCTCCAGCCAGATTGCTCAGGTCATCAAATCCTGTCT
GGAAGAAATCGCTGAGTCAACTAGCTGGGAAGATGTCCCTGGAACAACCATTGAATCCTGCGGAAACTACAAGGATCACA
GCCTCTTCTCAGCCAAAGAATGGGCTAAACTTATTCTCAGCCAAGGAATCTCAGATGATGCCTTTGAACGCCATGTGATT
TAA

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(7-151)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

39.333

93.75

0.369

Multiple sequence alignment