Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGD   Type   Machinery gene
Locus tag   DQM44_RS00730 Genome accession   NZ_LS483318
Coordinates   119298..119726 (+) Length   142 a.a.
NCBI ID   WP_014611932.1    Uniprot ID   -
Organism   Streptococcus dysgalactiae subsp. equisimilis strain NCTC5370     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 114298..124726
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQM44_RS00710 (NCTC5370_00147) - 116641..117006 (+) 366 WP_003055257.1 DUF1033 family protein -
  DQM44_RS00715 (NCTC5370_00148) comGA/cglA 117087..118028 (+) 942 WP_003062163.1 competence type IV pilus ATPase ComGA Machinery gene
  DQM44_RS00720 (NCTC5370_00149) comGB 117964..118995 (+) 1032 WP_015057201.1 competence type IV pilus assembly protein ComGB Machinery gene
  DQM44_RS00725 (NCTC5370_00150) comGC 118997..119323 (+) 327 WP_003055259.1 competence type IV pilus major pilin ComGC Machinery gene
  DQM44_RS00730 (NCTC5370_00151) comGD 119298..119726 (+) 429 WP_014611932.1 competence type IV pilus minor pilin ComGD Machinery gene
  DQM44_RS00735 (NCTC5370_00152) comGE 119734..119979 (+) 246 WP_003058569.1 competence type IV pilus minor pilin ComGE Machinery gene
  DQM44_RS00740 (NCTC5370_00153) comGF 119960..120400 (+) 441 WP_003061780.1 competence type IV pilus minor pilin ComGF Machinery gene
  DQM44_RS00745 (NCTC5370_00154) comGG 120429..120752 (+) 324 WP_227985720.1 competence type IV pilus minor pilin ComGG -
  DQM44_RS00750 (NCTC5370_00155) comGH 120815..121768 (+) 954 WP_022554118.1 class I SAM-dependent methyltransferase Machinery gene
  DQM44_RS00755 (NCTC5370_00156) - 121827..123023 (+) 1197 WP_003058485.1 acetate kinase -
  DQM44_RS00760 (NCTC5370_00157) - 123329..123535 (+) 207 WP_003058508.1 helix-turn-helix transcriptional regulator -
  DQM44_RS00765 (NCTC5370_00158) - 123638..124318 (+) 681 WP_003060329.1 type II CAAX endopeptidase family protein -

Sequence

Protein


Download         Length: 142 a.a.        Molecular weight: 16410.89 Da        Isoelectric Point: 9.9660

>NTDB_id=1016687 DQM44_RS00730 WP_014611932.1 119298..119726(+) (comGD) [Streptococcus dysgalactiae subsp. equisimilis strain NCTC5370]
MRLKNCNLKAFTLLESLLTLSVTSFIVLGLSVPVTSSYRRVQEQLFFTRFEHFYRHQQKLAILEHDQRVLTISSKQMLAA
EESLTIPDLIRVKNSQQLVIDQMGGNHSLAKIIFETTDQRVTYQFYLGSGNYQKTSQSLHRS

Nucleotide


Download         Length: 429 bp        

>NTDB_id=1016687 DQM44_RS00730 WP_014611932.1 119298..119726(+) (comGD) [Streptococcus dysgalactiae subsp. equisimilis strain NCTC5370]
ATGAGACTCAAAAACTGCAACCTTAAAGCTTTCACATTGCTTGAAAGCTTATTAACGCTATCAGTAACAAGTTTTATTGT
CTTGGGGTTATCTGTGCCTGTGACAAGTAGTTATCGAAGGGTTCAGGAACAGCTTTTTTTCACTCGTTTTGAGCACTTTT
ATCGTCACCAACAAAAGTTGGCTATTTTGGAACATGATCAACGGGTTTTGACAATTTCTTCGAAACAAATGCTAGCGGCA
GAGGAGTCGTTAACAATACCTGACTTGATAAGGGTTAAGAATAGCCAGCAATTGGTTATTGATCAAATGGGAGGAAATCA
TTCTTTAGCAAAGATAATATTCGAGACGACTGATCAACGGGTAACTTATCAATTTTATCTAGGGAGTGGAAATTATCAAA
AAACAAGTCAAAGCTTACATCGCTCTTGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGD Streptococcus gordonii str. Challis substr. CH1

43.382

95.775

0.415
  comGD Streptococcus mutans UA140

45.736

90.845

0.415
  comGD Streptococcus mutans UA159

45.736

90.845

0.415
  comGD/cglD Streptococcus mitis NCTC 12261

38.235

95.775

0.366