Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   DQL62_RS06190 Genome accession   NZ_LS483300
Coordinates   1213001..1213774 (+) Length   257 a.a.
NCBI ID   WP_000055337.1    Uniprot ID   P63843
Organism   Staphylococcus aureus strain NCTC7485     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1208001..1218774
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQL62_RS06170 (NCTC7485_01166) trmFO 1208343..1209650 (+) 1308 WP_000195254.1 methylenetetrahydrofolate--tRNA-(uracil(54)- C(5))-methyltransferase (FADH(2)-oxidizing) TrmFO -
  DQL62_RS06175 (NCTC7485_01167) xerC 1210069..1210965 (+) 897 WP_001015607.1 tyrosine recombinase XerC -
  DQL62_RS06180 (NCTC7485_01168) hslV 1210962..1211507 (+) 546 WP_000072680.1 ATP-dependent protease subunit HslV -
  DQL62_RS06185 (NCTC7485_01169) hslU 1211573..1212976 (+) 1404 WP_045158023.1 ATP-dependent protease ATPase subunit HslU -
  DQL62_RS06190 (NCTC7485_01170) codY 1213001..1213774 (+) 774 WP_000055337.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  DQL62_RS06195 - 1213825..1213917 (+) 93 WP_031788481.1 hypothetical protein -
  DQL62_RS06200 (NCTC7485_01171) rpsB 1214116..1214883 (+) 768 WP_000268484.1 30S ribosomal protein S2 -
  DQL62_RS06205 - 1214917..1215030 (+) 114 WP_001789890.1 hypothetical protein -
  DQL62_RS06210 (NCTC7485_01172) tsf 1215065..1215946 (+) 882 WP_045158025.1 translation elongation factor Ts -
  DQL62_RS06215 (NCTC7485_01173) pyrH 1216083..1216805 (+) 723 WP_000057330.1 UMP kinase -
  DQL62_RS06220 (NCTC7485_01174) frr 1216824..1217378 (+) 555 WP_001280006.1 ribosome recycling factor -
  DQL62_RS06225 (NCTC7485_01175) - 1217751..1218521 (+) 771 WP_045158027.1 isoprenyl transferase -

Sequence

Protein


Download         Length: 257 a.a.        Molecular weight: 28755.13 Da        Isoelectric Point: 6.0680

>NTDB_id=1015658 DQL62_RS06190 WP_000055337.1 1213001..1213774(+) (codY) [Staphylococcus aureus strain NCTC7485]
MSLLSKTRELNTLLQKHKGIAVDFKDVAQTISSVTVTNVFIVSRRGKILGSSLNELLKSQRIIQMLEERHIPSEYTERLM
EVKQTESNIDIDNVLTVFPPENRELFIDSRTTIFPILGGGERLGTLVLGRVHDDFNENDLVLGEYAATVIGMEILREKHS
EVEKEARDKAAITMAINSLSYSEKEAIEHIFEELGGTEGLLIASKVADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
FIKVKKEKFLDELEKSK

Nucleotide


Download         Length: 774 bp        

>NTDB_id=1015658 DQL62_RS06190 WP_000055337.1 1213001..1213774(+) (codY) [Staphylococcus aureus strain NCTC7485]
ATGAGCTTATTATCTAAAACGAGAGAGTTAAACACGTTACTTCAAAAACACAAAGGTATTGCGGTTGATTTTAAAGATGT
AGCACAAACGATTAGTAGCGTAACTGTAACAAATGTATTTATTGTATCGCGTCGAGGTAAAATTTTAGGGTCGAGTCTAA
ATGAATTATTAAAAAGTCAAAGAATTATTCAAATGTTGGAAGAAAGACATATTCCAAGTGAATATACAGAACGATTAATG
GAAGTTAAACAAACAGAATCAAATATTGATATCGACAATGTATTAACAGTTTTCCCACCTGAAAACAGAGAATTATTCAT
AGATAGTCGTACAACTATCTTCCCAATTTTAGGTGGAGGAGAAAGATTAGGTACATTAGTACTTGGTCGAGTACATGATG
ATTTTAATGAAAATGATTTGGTACTAGGTGAATATGCTGCTACAGTTATTGGTATGGAAATCTTACGTGAGAAGCATAGT
GAAGTAGAAAAAGAAGCGCGCGATAAAGCTGCTATTACAATGGCGATTAATTCATTATCTTATTCTGAAAAAGAAGCAAT
AGAACATATCTTTGAAGAACTTGGCGGTACGGAAGGCCTATTAATCGCATCAAAAGTTGCAGATAGAGTTGGTATTACTA
GATCTGTAATTGTAAATGCACTACGTAAATTAGAAAGTGCTGGTGTAATTGAATCACGTTCTTTAGGAATGAAAGGTACT
TTTATTAAAGTTAAAAAAGAAAAATTCTTAGATGAATTAGAAAAAAGTAAGTAA

Domains

Predicted by InterProScan.

CodY GAF-like domain (CodY)

(2-178)

CodY helix-turn-helix domain (HTH_CodY)

(198-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P63843

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

64.202

100

0.642
  codY Lactococcus lactis subsp. lactis strain DGCC12653

42.802

100

0.428

Multiple sequence alignment