Detailed information NTG1015660

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: ABV523_RS00655
• Genome accession: NZ_CP159758
• Coordinates: 136544..137395 (+)
• Length: 283 a.a.
• NCBI ID: WP_369608785.1
• Uniprot ID: -
• Organism: Snodgrassella alvi strain Acer02
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 131544..142395

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ABV523_RS00640 (ABV523_10325)	recJ	131676..133379 (+)	1704	WP_369608786.1	single-stranded-DNA-specific exonuclease RecJ	-
ABV523_RS00645 (ABV523_10320)	pilF	133579..135258 (+)	1680	WP_267408994.1	type IV-A pilus assembly ATPase PilB	Machinery gene
ABV523_RS00650 (ABV523_10315)	pilG	135305..136537 (+)	1233	WP_100156468.1	type II secretion system F family protein	Machinery gene
ABV523_RS00655 (ABV523_10310)	pilD	136544..137395 (+)	852	WP_369608785.1	A24 family peptidase	Machinery gene
ABV523_RS00660 (ABV523_10305)	coaE	137392..138006 (+)	615	WP_100156466.1	dephospho-CoA kinase	-
ABV523_RS00665 (ABV523_10300)	zapD	138012..138764 (+)	753	WP_367430673.1	cell division protein ZapD	-
ABV523_RS00670 (ABV523_10295)	yacG	138764..138961 (+)	198	WP_100140841.1	DNA gyrase inhibitor YacG	-
ABV523_RS00675 (ABV523_10290)	-	139011..139928 (+)	918	WP_100156465.1	ABC transporter ATP-binding protein	-
ABV523_RS00680 (ABV523_16120)	-	139931..140686 (+)	756	WP_100140882.1	ABC transporter permease	-
ABV523_RS00685 (ABV523_10280)	-	140743..140991 (+)	249	WP_100140843.1	BolA family protein	-
ABV523_RS00690 (ABV523_10275)	murA	141035..142291 (+)	1257	WP_369608784.1	UDP-N-acetylglucosamine 1-carboxyvinyltransferase	-

Sequence

Protein

• Length: 283 a.a.
• Molecular weight: 31142.15 Da
• Isoelectric Point: 7.5760

>NTDB_id=1015660 ABV523_RS00655 WP_369608785.1 136544..137395(+) (pilD) [Snodgrassella alvi strain Acer02]
MLSDTLFFSIIALITGLAVGSFLNVVIYRLPIMMERSWQAEARMALQLPAENFACFNLCVPPSACPHCQHKIRWWQNIPL
ISYLLLHGRCAACAKPISPRYFCVELLTGLAFAAVIWRYDVTPVAAGGLVLTAALITLTFIDADTQLLPDQITLPLLWLG
LLFNWYSEFVSLSAAIWGAVAGYMSLWSLFWLFKLITGKDGMGYGDFKLLAALGAWMGAAALPLIVFIAAIVGIIASLIL
KVARSQPMAFGPALAISGWIVWMANSQISQLIHWWLQLSGFDA

Nucleotide

• Length: 852 bp

>NTDB_id=1015660 ABV523_RS00655 WP_369608785.1 136544..137395(+) (pilD) [Snodgrassella alvi strain Acer02]
ATGTTATCAGATACACTGTTTTTCTCCATCATCGCATTAATAACAGGTTTAGCTGTAGGCAGCTTTCTGAACGTAGTCAT
CTATCGTCTGCCGATCATGATGGAACGCAGCTGGCAGGCTGAAGCACGAATGGCATTGCAATTACCGGCAGAAAATTTTG
CCTGTTTCAATCTTTGCGTACCCCCGTCAGCCTGCCCCCATTGCCAGCATAAAATTCGCTGGTGGCAAAATATACCATTG
ATAAGTTATCTTCTCTTACATGGTCGTTGTGCTGCTTGTGCAAAACCGATTAGCCCTCGCTATTTCTGTGTCGAACTGCT
TACCGGACTAGCGTTTGCCGCAGTAATATGGCGCTATGATGTAACACCAGTTGCCGCCGGTGGTCTGGTTTTGACAGCTG
CGTTGATAACATTAACATTTATCGATGCTGATACTCAGCTCTTGCCAGATCAGATTACTTTGCCATTACTGTGGCTGGGA
TTACTGTTTAATTGGTATAGTGAATTTGTATCCTTATCTGCAGCTATATGGGGAGCAGTAGCAGGCTATATGAGCTTGTG
GTCACTGTTTTGGCTATTCAAGCTCATAACCGGAAAAGATGGCATGGGTTATGGTGATTTTAAACTGCTGGCTGCTCTAG
GCGCATGGATGGGTGCTGCTGCATTGCCATTAATTGTATTTATAGCTGCTATTGTTGGCATCATTGCCTCTTTGATACTC
AAAGTTGCCCGCAGTCAGCCAATGGCTTTTGGCCCGGCTCTAGCCATCTCCGGCTGGATTGTTTGGATGGCCAACAGCCA
AATTAGCCAGCTCATTCACTGGTGGTTGCAACTTTCTGGATTCGATGCATGA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (129-236)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (14-119)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Neisseria gonorrhoeae MS11	55.019	95.053	0.523
pilD	Acinetobacter baumannii D1279779	51.292	95.76	0.491
pilD	Acinetobacter nosocomialis M2	51.292	95.76	0.491
pilD	Vibrio cholerae strain A1552	49.097	97.88	0.481
pilD	Vibrio campbellii strain DS40M4	46.863	95.76	0.449