Detailed information NTG1013805

Bioinformatically predicted

Overview

• Name: comGF
• Type: Machinery gene
• Locus tag: ABVR74_RS00790
• Genome accession: NZ_CP159484
• Coordinates: 165457..165903 (+)
• Length: 148 a.a.
• NCBI ID: WP_029344525.1
• Uniprot ID: A0AAP4JUI5
• Organism: Lactococcus lactis subsp. lactis strain CBA3648
• Function: dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 160457..170903

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ABVR74_RS00765 (ABVR74_00765)	comGA	162534..163472 (+)	939	WP_353891726.1	competence type IV pilus ATPase ComGA	Machinery gene
ABVR74_RS00770 (ABVR74_00770)	comGB	163420..164439 (+)	1020	WP_058223571.1	competence type IV pilus assembly protein ComGB	Machinery gene
ABVR74_RS00775 (ABVR74_00775)	comGC	164566..164835 (+)	270	WP_023188581.1	competence type IV pilus major pilin ComGC	Machinery gene
ABVR74_RS00780 (ABVR74_00780)	comGD	164810..165226 (+)	417	WP_025017137.1	competence type IV pilus minor pilin ComGD	Machinery gene
ABVR74_RS00785 (ABVR74_00785)	comGE	165198..165494 (+)	297	WP_010906316.1	competence type IV pilus minor pilin ComGE	Machinery gene
ABVR74_RS00790 (ABVR74_00790)	comGF	165457..165903 (+)	447	WP_029344525.1	competence type IV pilus minor pilin ComGF	Machinery gene
ABVR74_RS00795 (ABVR74_00795)	comGG	165942..166226 (+)	285	WP_025017139.1	competence type IV pilus minor pilin ComGG	Machinery gene
ABVR74_RS00800 (ABVR74_00800)	-	166308..166745 (+)	438	WP_003129992.1	zinc-dependent MarR family transcriptional regulator	-
ABVR74_RS00805 (ABVR74_00805)	-	166742..167584 (+)	843	WP_015427160.1	metal ABC transporter substrate-binding protein	-
ABVR74_RS00810 (ABVR74_00810)	-	167761..168498 (+)	738	WP_012898617.1	metal ABC transporter ATP-binding protein	-
ABVR74_RS00815 (ABVR74_00815)	-	168491..169300 (+)	810	WP_014570791.1	metal ABC transporter permease	-
ABVR74_RS00820 (ABVR74_00820)	-	169338..170204 (-)	867	WP_025017140.1	RluA family pseudouridine synthase	-
ABVR74_RS00825 (ABVR74_00825)	-	170409..170786 (+)	378	WP_003129983.1	pyridoxamine 5'-phosphate oxidase family protein	-

Sequence

Protein

• Length: 148 a.a.
• Molecular weight: 17111.91 Da
• Isoelectric Point: 8.6780

>NTDB_id=1013805 ABVR74_RS00790 WP_029344525.1 165457..165903(+) (comGF) [Lactococcus lactis subsp. lactis strain CBA3648]
MERKLCDLNFKVKAFTLLECLVALLAISGSVLVISGLTKMLKEQVAISQSDSIKDWQIFCQQMRFELSGTKLDRVEQNFL
YVTKDKKLRFGFMSDDFRKTDDKGQGYQPMLYDIKAAKIQATKNLITIRIDFNQGGERTFIYQFPEDT

Nucleotide

• Length: 447 bp

>NTDB_id=1013805 ABVR74_RS00790 WP_029344525.1 165457..165903(+) (comGF) [Lactococcus lactis subsp. lactis strain CBA3648]
ATGGAAAGGAAATTATGCGACTTGAACTTCAAAGTTAAAGCATTTACCTTGTTGGAGTGTTTGGTGGCACTTCTTGCAAT
TTCTGGTTCAGTTCTTGTCATCTCAGGTTTAACAAAGATGTTGAAAGAACAAGTGGCGATTAGTCAAAGTGATAGCATAA
AAGATTGGCAAATTTTCTGTCAGCAAATGCGTTTTGAACTCTCAGGAACAAAATTAGATAGGGTAGAACAGAATTTTCTG
TATGTAACTAAAGATAAAAAACTAAGGTTTGGTTTTATGAGTGATGATTTCCGGAAGACTGATGACAAAGGTCAGGGTTA
TCAGCCAATGCTTTATGATATAAAAGCGGCTAAGATTCAAGCTACTAAAAATTTAATAACCATAAGAATTGATTTTAATC
AAGGAGGTGAAAGAACATTTATTTATCAATTTCCAGAAGATACGTAA

Domains

Predicted by InterproScan.

• Putative Competence protein ComGF (ComGF) (48-137)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comGF	Lactococcus lactis subsp. cremoris KW2	76.259	93.919	0.716
comYF	Streptococcus mutans UA140	48.227	95.27	0.459
comYF	Streptococcus mutans UA159	47.518	95.27	0.453
comGF/cglF	Streptococcus mitis SK321	43.066	92.568	0.399
comGF/cglF	Streptococcus pneumoniae Rx1	40.426	95.27	0.385
comGF/cglF	Streptococcus pneumoniae D39	40.426	95.27	0.385
comGF/cglF	Streptococcus pneumoniae R6	40.426	95.27	0.385
comGF/cglF	Streptococcus pneumoniae TIGR4	40.426	95.27	0.385
comGF/cglF	Streptococcus mitis NCTC 12261	41.606	92.568	0.385