Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   ABVN21_RS24115 Genome accession   NZ_CP159258
Coordinates   5348865..5350358 (-) Length   497 a.a.
NCBI ID   WP_339552573.1    Uniprot ID   A0AAU8E122
Organism   Pseudomonas sp. MYb327     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5343865..5355358
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABVN21_RS24100 (ABVN21_24100) - 5345998..5346747 (-) 750 WP_339552570.1 methyltransferase domain-containing protein -
  ABVN21_RS24105 (ABVN21_24105) - 5346744..5347340 (-) 597 WP_339552571.1 adenylyl-sulfate kinase -
  ABVN21_RS24110 (ABVN21_24110) - 5347365..5348537 (-) 1173 WP_339552572.1 hypothetical protein -
  ABVN21_RS24115 (ABVN21_24115) comM 5348865..5350358 (-) 1494 WP_339552573.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  ABVN21_RS24120 (ABVN21_24120) - 5350573..5350839 (-) 267 WP_339552574.1 accessory factor UbiK family protein -
  ABVN21_RS24125 (ABVN21_24125) glnK 5351260..5351598 (+) 339 WP_002555808.1 P-II family nitrogen regulator -
  ABVN21_RS24130 (ABVN21_24130) - 5351634..5352971 (+) 1338 WP_339552575.1 ammonium transporter -
  ABVN21_RS24135 (ABVN21_24135) - 5353186..5353611 (+) 426 WP_339552576.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  ABVN21_RS24140 (ABVN21_24140) sutA 5353713..5354036 (+) 324 WP_192416627.1 transcriptional regulator SutA -
  ABVN21_RS24145 (ABVN21_24145) - 5354236..5354943 (-) 708 WP_339552577.1 HAD-IA family hydrolase -

Sequence

Protein


Download         Length: 497 a.a.        Molecular weight: 53109.16 Da        Isoelectric Point: 8.2999

>NTDB_id=1012942 ABVN21_RS24115 WP_339552573.1 5348865..5350358(-) (comM) [Pseudomonas sp. MYb327]
MSLSIVHSRAQVGVEAPAVTVEVHLANGLPSLTMVGLPEAAVKESKDRVRSAIINSGLQFPARRITLNLAPADLPKDGGR
FDLAIALGILSASVQVPTLTLDDVECLGELALSGAVRAVRGVLPAALAARKAGRSLMVPRANAEEACLASGLKVIAVDHL
LEAVAHFNGHTPVEPYISDGLILASKPYPDLNEVQGQQAAKRALLIAAAGAHNLLFCGPPGTGKTLLASRLPGLLPPLSE
SEALEVAAIQSVTSCAPLSHWPQRPFRQPHHSASGPALVGGSSKPQPGEITLAHHGVLFLDELPEFDRKVLEVLREPMES
GHIVISRAKDRVRFPARFQLVAAMNPCPCGYLGEPSGKCSCTPDKVQRYRNKLSGPLLDRIDLHLTVAREPTALNPVSTP
GDDSASATALIANARERQQRRQGCANAFLDLPGLRRHCKLSTADEKWLESACERLTLSLRSAHRLLKVARTLADLEQRDA
ITRDHLAEALQYRPGTQ

Nucleotide


Download         Length: 1494 bp        

>NTDB_id=1012942 ABVN21_RS24115 WP_339552573.1 5348865..5350358(-) (comM) [Pseudomonas sp. MYb327]
ATGTCCCTCTCCATCGTCCACAGCCGCGCCCAGGTCGGCGTGGAAGCGCCCGCCGTTACGGTTGAAGTGCATCTGGCCAA
CGGCTTGCCATCGCTGACCATGGTCGGTCTGCCCGAAGCGGCGGTGAAGGAGAGCAAGGATCGGGTGCGCAGTGCGATCA
TCAATTCGGGGCTGCAATTTCCGGCGCGGCGGATCACGTTGAATCTGGCACCGGCAGATCTGCCCAAGGACGGTGGGCGG
TTCGATCTGGCGATTGCGTTGGGGATTCTTTCCGCCAGTGTGCAGGTGCCGACGCTGACGCTCGATGATGTGGAATGTTT
GGGTGAGTTGGCGCTGTCAGGTGCTGTGCGGGCCGTGCGTGGTGTGTTGCCGGCGGCGTTGGCGGCGCGCAAGGCCGGGC
GTTCGTTGATGGTGCCGCGGGCGAATGCCGAGGAGGCGTGCCTGGCATCGGGGTTGAAGGTGATTGCGGTGGATCATCTG
TTGGAAGCTGTGGCCCATTTCAATGGGCACACTCCGGTCGAGCCCTACATTTCTGATGGATTGATACTCGCCAGCAAGCC
CTATCCCGACCTGAATGAAGTACAAGGCCAGCAAGCCGCCAAACGGGCGTTGCTGATTGCTGCTGCGGGGGCGCACAACT
TGTTGTTCTGCGGACCTCCCGGAACGGGCAAGACGCTTCTGGCGAGTCGCCTTCCAGGATTGCTGCCACCGCTGAGCGAA
AGCGAAGCTCTGGAAGTGGCGGCAATTCAATCGGTCACCAGCTGTGCGCCGTTGAGCCATTGGCCGCAGCGTCCCTTTCG
GCAACCGCACCACTCGGCATCTGGTCCTGCGCTGGTTGGCGGCAGCTCGAAACCGCAACCCGGGGAAATCACTCTCGCCC
ACCACGGCGTGCTGTTTCTCGATGAGTTGCCGGAGTTTGATCGAAAGGTACTTGAGGTACTCAGGGAACCGATGGAATCG
GGGCATATCGTAATCTCAAGGGCTAAAGACCGTGTACGGTTTCCAGCGCGCTTTCAGTTGGTGGCGGCAATGAACCCATG
CCCCTGCGGCTATCTTGGAGAACCGAGCGGCAAGTGCTCATGTACACCGGACAAGGTGCAGCGGTATCGCAACAAACTAT
CGGGCCCGCTGCTGGACCGTATCGACCTGCACCTGACCGTCGCTCGAGAGCCCACGGCGCTGAACCCTGTTTCGACACCC
GGCGATGACAGCGCCAGTGCTACGGCGCTGATTGCCAATGCCCGGGAACGCCAGCAGAGACGTCAGGGTTGCGCGAATGC
CTTCCTGGATTTACCAGGGCTGCGTCGGCACTGCAAGTTATCCACAGCCGACGAGAAATGGCTGGAATCGGCGTGTGAGC
GGTTGACCTTGTCACTGCGCTCGGCTCATCGACTGCTCAAAGTTGCGCGGACACTGGCCGACCTTGAGCAGCGTGATGCA
ATCACTCGTGACCACCTGGCTGAGGCACTGCAATATCGTCCGGGGACACAATGA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-390)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(402-493)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio campbellii strain DS40M4

54.545

99.598

0.543
  comM Vibrio cholerae strain A1552

54.343

99.598

0.541
  comM Haemophilus influenzae Rd KW20

53.106

100

0.533
  comM Glaesserella parasuis strain SC1401

52.4

100

0.527
  comM Legionella pneumophila str. Paris

49.597

99.799

0.495
  comM Legionella pneumophila strain ERS1305867

49.597

99.799

0.495
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

44.8

100

0.451

Multiple sequence alignment