Detailed information
Bioinformatically predicted
Overview
| Name | comEA | Type | Machinery gene |
| Locus tag | ABUE27_RS04745 | Genome accession | NZ_CP158974 |
| Coordinates | 1011193..1011504 (+) | Length | 103 a.a. |
| NCBI ID | WP_001166105.1 | Uniprot ID | Q9KQT1 |
| Organism | Vibrio cholerae strain CNRVC240027 | ||
| Function | dsDNA binding (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1006193..1016504
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ABUE27_RS04730 (ABUE27_04730) | lon | 1006230..1008590 (+) | 2361 | WP_001047611.1 | endopeptidase La | - |
| ABUE27_RS04735 (ABUE27_04735) | - | 1008774..1009046 (+) | 273 | WP_001044516.1 | HU family DNA-binding protein | - |
| ABUE27_RS04740 (ABUE27_04740) | ppiD | 1009199..1011058 (+) | 1860 | WP_000969331.1 | peptidylprolyl isomerase | - |
| ABUE27_RS04745 (ABUE27_04745) | comEA | 1011193..1011504 (+) | 312 | WP_001166105.1 | ComEA family DNA-binding protein | Machinery gene |
| ABUE27_RS04750 (ABUE27_04750) | cmk | 1011687..1012364 (+) | 678 | WP_000094752.1 | (d)CMP kinase | - |
| ABUE27_RS04755 (ABUE27_04755) | rpsA | 1012473..1014143 (+) | 1671 | WP_000140318.1 | 30S ribosomal protein S1 | - |
| ABUE27_RS04760 (ABUE27_04760) | ihfB | 1014431..1014709 (+) | 279 | WP_000167341.1 | integration host factor subunit beta | - |
| ABUE27_RS04765 (ABUE27_04765) | - | 1014848..1015129 (+) | 282 | WP_000691492.1 | LapA family protein | - |
| ABUE27_RS04770 (ABUE27_04770) | lapB | 1015141..1016310 (+) | 1170 | WP_000889971.1 | lipopolysaccharide assembly protein LapB | - |
Sequence
Protein
Download Length: 103 a.a. Molecular weight: 10966.78 Da Isoelectric Point: 5.0506
>NTDB_id=1012146 ABUE27_RS04745 WP_001166105.1 1011193..1011504(+) (comEA) [Vibrio cholerae strain CNRVC240027]
MQIKTKIVTLFLSLCLPTLPLLANAEETAPAAQVEEGIVITVNINTASAEELATLLKGIGLKKAQAIVDYREANGPFTHI
DDLTNVKGIGEATVRNNAARILL
MQIKTKIVTLFLSLCLPTLPLLANAEETAPAAQVEEGIVITVNINTASAEELATLLKGIGLKKAQAIVDYREANGPFTHI
DDLTNVKGIGEATVRNNAARILL
Nucleotide
Download Length: 312 bp
>NTDB_id=1012146 ABUE27_RS04745 WP_001166105.1 1011193..1011504(+) (comEA) [Vibrio cholerae strain CNRVC240027]
ATGCAAATCAAAACCAAAATAGTGACACTGTTTCTTTCTCTCTGCCTGCCGACATTACCGTTACTGGCCAATGCCGAGGA
AACGGCACCCGCTGCGCAGGTAGAAGAAGGTATTGTGATCACTGTCAATATTAATACCGCTTCTGCAGAAGAGCTGGCGA
CGTTACTCAAAGGCATCGGGCTTAAGAAAGCTCAGGCCATTGTCGATTATCGAGAAGCCAACGGTCCTTTTACTCATATC
GATGATCTGACGAATGTGAAAGGGATTGGTGAAGCGACAGTGCGCAACAATGCCGCAAGGATCTTGTTATAA
ATGCAAATCAAAACCAAAATAGTGACACTGTTTCTTTCTCTCTGCCTGCCGACATTACCGTTACTGGCCAATGCCGAGGA
AACGGCACCCGCTGCGCAGGTAGAAGAAGGTATTGTGATCACTGTCAATATTAATACCGCTTCTGCAGAAGAGCTGGCGA
CGTTACTCAAAGGCATCGGGCTTAAGAAAGCTCAGGCCATTGTCGATTATCGAGAAGCCAACGGTCCTTTTACTCATATC
GATGATCTGACGAATGTGAAAGGGATTGGTGAAGCGACAGTGCGCAACAATGCCGCAAGGATCTTGTTATAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comEA | Vibrio cholerae C6706 |
100 |
100 |
1 |
| comEA | Vibrio cholerae strain A1552 |
100 |
100 |
1 |
| comEA | Vibrio parahaemolyticus RIMD 2210633 |
62.766 |
91.262 |
0.573 |
| comEA | Vibrio campbellii strain DS40M4 |
58.333 |
93.204 |
0.544 |
| comE1/comEA | Haemophilus influenzae Rd KW20 |
40.541 |
100 |
0.437 |