Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   ABS648_RS01030 Genome accession   NZ_CP158373
Coordinates   217932..219428 (-) Length   498 a.a.
NCBI ID   WP_350447434.1    Uniprot ID   A0AAU7Y2I8
Organism   Pseudomonas solani strain T3     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 212932..224428
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABS648_RS01015 (ABS648_01015) - 213909..214829 (+) 921 WP_043241005.1 LysR substrate-binding domain-containing protein -
  ABS648_RS01020 (ABS648_01020) - 214979..216955 (+) 1977 WP_271659590.1 methyl-accepting chemotaxis protein -
  ABS648_RS01025 (ABS648_01025) - 217031..217837 (-) 807 WP_031287536.1 TlpA disulfide reductase family protein -
  ABS648_RS01030 (ABS648_01030) comM 217932..219428 (-) 1497 WP_350447434.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  ABS648_RS01035 (ABS648_01035) - 219463..219726 (-) 264 WP_021218955.1 accessory factor UbiK family protein -
  ABS648_RS01040 (ABS648_01040) glnK 220137..220475 (+) 339 WP_003457590.1 P-II family nitrogen regulator -
  ABS648_RS01045 (ABS648_01045) - 220510..221829 (+) 1320 WP_350447435.1 ammonium transporter -
  ABS648_RS01050 (ABS648_01050) - 222036..222461 (+) 426 WP_350447436.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  ABS648_RS01055 (ABS648_01055) sutA 222538..222867 (+) 330 WP_021218958.1 transcriptional regulator SutA -
  ABS648_RS01060 (ABS648_01060) - 222928..223632 (-) 705 WP_350447437.1 HAD family hydrolase -

Sequence

Protein


Download         Length: 498 a.a.        Molecular weight: 52748.56 Da        Isoelectric Point: 7.5090

>NTDB_id=1011040 ABS648_RS01030 WP_350447434.1 217932..219428(-) (comM) [Pseudomonas solani strain T3]
MSLALVHSRAQVGVEAPAVTVEAHLTNGLPSLALVGLPEAAVKESKDRVRSAILTSGFEFPLRRITLNLAPADLPKDGGR
FDLAVALGILAASGQVPVASLTEVECLGELALSGALRPVQGVLPAALAARAAGRTLVVPKDNAEEASLASGLRVIAVGHL
LELAAHLTGQTPLEPYASAGLPNRADAYPDLAEVQGQVAAKRALLVAAAGAHNLLLSGPPGTGKTLLASRLPGLLPPLQE
QEALEVAAIHSVASNTPLDSWPHRPFRQPHHSASGPALVGGGSKPRPGEITLAHQGVLFLDELPEFDRKVLEVLREPLES
GEIVIARANDRVRFPARFQLVAAMNPCPCGYLGDVTNPCRCTPEQIQRYRAKLSGPLLDRIDLHLTVAREATSLDDPKPG
GQDSASAAKTVAQARQRQLDRQGCANAFLDLQGLRRHCSLVVEDRRWLENACERLGLSLRAAHRIIKVARTLADLDGTPA
IARQHLAEALQYRPATEP

Nucleotide


Download         Length: 1497 bp        

>NTDB_id=1011040 ABS648_RS01030 WP_350447434.1 217932..219428(-) (comM) [Pseudomonas solani strain T3]
ATGTCCCTGGCCCTCGTTCACAGCCGCGCCCAGGTAGGCGTCGAAGCGCCTGCCGTAACCGTGGAAGCGCACCTCACCAA
CGGCCTGCCGTCCCTGGCCCTGGTCGGCCTGCCGGAAGCGGCGGTCAAGGAAAGCAAGGACCGCGTGCGCAGCGCCATCC
TCACCAGCGGCTTCGAGTTCCCGCTGCGGCGCATCACCCTGAACCTGGCGCCGGCCGACCTGCCCAAGGACGGCGGGCGT
TTCGACCTGGCCGTGGCCCTCGGCATCCTCGCCGCCAGCGGCCAGGTGCCGGTCGCCAGCCTGACCGAGGTGGAATGCCT
CGGTGAGCTGGCCCTCTCCGGCGCGCTGCGCCCGGTCCAGGGCGTCCTCCCCGCTGCCCTTGCCGCCCGCGCGGCAGGGC
GCACCCTGGTGGTGCCGAAGGACAATGCCGAAGAAGCCAGCCTCGCCAGCGGCCTGCGGGTGATCGCCGTCGGCCACCTG
CTGGAACTGGCCGCGCACCTCACCGGGCAAACGCCCCTCGAACCCTATGCCTCCGCCGGCCTGCCGAACCGCGCCGACGC
CTACCCGGACCTCGCCGAAGTACAGGGCCAGGTGGCCGCCAAGCGCGCCTTGCTGGTGGCCGCCGCCGGTGCCCACAATC
TGCTGCTCTCCGGGCCGCCCGGCACCGGCAAGACGCTGCTCGCCAGCCGCCTGCCCGGCCTGCTGCCGCCCTTGCAGGAG
CAGGAGGCACTGGAAGTCGCCGCCATCCACTCGGTGGCCAGCAACACCCCGCTGGACAGTTGGCCGCACCGCCCCTTCCG
CCAGCCGCACCACAGCGCCTCCGGGCCCGCCCTGGTGGGCGGCGGCAGCAAGCCCCGCCCCGGAGAAATCACCCTGGCCC
ACCAGGGCGTGCTGTTCCTCGACGAGCTGCCGGAGTTCGACAGAAAGGTTCTCGAGGTCCTGCGCGAGCCCCTGGAAAGC
GGCGAGATCGTCATCGCCCGGGCCAACGACCGGGTGCGCTTCCCGGCGCGTTTCCAGCTGGTCGCCGCCATGAACCCCTG
CCCCTGCGGCTACCTGGGCGACGTCACCAACCCATGCCGTTGCACCCCGGAGCAGATCCAGCGCTACCGCGCCAAGCTCT
CCGGCCCACTGCTCGACCGCATCGACCTGCACCTCACCGTCGCCCGCGAAGCCACCTCGCTGGACGACCCCAAGCCCGGC
GGCCAGGACAGTGCAAGCGCCGCGAAAACCGTGGCCCAGGCCCGCCAGCGCCAGCTCGATCGCCAGGGCTGCGCCAACGC
GTTTCTCGACCTCCAGGGCCTGCGTCGCCACTGCTCGCTGGTGGTGGAGGACCGCCGCTGGCTGGAAAACGCCTGCGAAC
GCCTCGGCCTGTCGTTGCGCGCCGCACACCGCATCATCAAGGTCGCCCGCACCCTCGCCGATCTCGATGGCACCCCGGCC
ATTGCCCGCCAGCACCTGGCCGAGGCGCTGCAGTACCGACCGGCCACCGAGCCCTGA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-390)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(402-493)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio campbellii strain DS40M4

56.364

99.398

0.56
  comM Vibrio cholerae strain A1552

55.758

99.398

0.554
  comM Haemophilus influenzae Rd KW20

54

100

0.542
  comM Glaesserella parasuis strain SC1401

53.4

100

0.536
  comM Legionella pneumophila str. Paris

49.501

100

0.498
  comM Legionella pneumophila strain ERS1305867

49.501

100

0.498
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

46.521

100

0.47

Multiple sequence alignment