Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   ABNG17_RS17160 Genome accession   NZ_CP158181
Coordinates   3182996..3184120 (-) Length   374 a.a.
NCBI ID   WP_335349975.1    Uniprot ID   -
Organism   Bacillus pumilus strain RI06-95     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3177996..3189120
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABNG17_RS17125 (ABNG17_17110) flgL 3178176..3179087 (-) 912 WP_137054345.1 flagellar hook-associated protein FlgL -
  ABNG17_RS17130 (ABNG17_17115) flgK 3179097..3180617 (-) 1521 WP_003213544.1 flagellar hook-associated protein FlgK -
  ABNG17_RS17135 (ABNG17_17120) - 3180633..3181115 (-) 483 WP_050944342.1 flagellar protein FlgN -
  ABNG17_RS17140 (ABNG17_17125) flgM 3181134..3181397 (-) 264 WP_003213252.1 flagellar biosynthesis anti-sigma factor FlgM -
  ABNG17_RS17145 (ABNG17_17130) - 3181477..3181896 (-) 420 WP_003212865.1 TIGR03826 family flagellar region protein -
  ABNG17_RS17150 (ABNG17_17135) comFC 3181953..3182639 (-) 687 WP_212045588.1 ComF family protein Machinery gene
  ABNG17_RS17155 (ABNG17_17140) - 3182636..3182929 (-) 294 WP_050944343.1 competence protein ComFB -
  ABNG17_RS17160 (ABNG17_17145) comFA 3182996..3184120 (-) 1125 WP_335349975.1 DEAD/DEAH box helicase Machinery gene
  ABNG17_RS17165 (ABNG17_17150) - 3184495..3185337 (-) 843 WP_003213402.1 DegV family protein -
  ABNG17_RS17170 (ABNG17_17155) degU 3185555..3186244 (-) 690 WP_008348273.1 two-component system response regulator DegU Regulator
  ABNG17_RS17175 (ABNG17_17160) degS 3186309..3187484 (-) 1176 WP_003213166.1 sensor histidine kinase Regulator
  ABNG17_RS17180 (ABNG17_17165) - 3187706..3188374 (+) 669 WP_003212936.1 YigZ family protein -

Sequence

Protein


Download         Length: 374 a.a.        Molecular weight: 42751.09 Da        Isoelectric Point: 10.5170

>NTDB_id=1010152 ABNG17_RS17160 WP_335349975.1 3182996..3184120(-) (comFA) [Bacillus pumilus strain RI06-95]
MGKTTECGFLYEWTGPQMEEACHSELTWQGNLSKGQKRASEKLIEAIKNKSDLLIWAVCGAGKTEVLFHGIEYALHQGMS
VCIATPRTDVVLELEPRLKKAFQGMKIAVLYGGSPQRFQIEKLVIATTHQLMRYKHAFDVLIIDEVDAFPYSIDGRLQFA
VLKAMRKKGVRVYLSATPSKKMIRDVSRGQLEAIKIPLRFHQQPLPVPSFQWIGHWKKKLKKNQLPPKVMNWMQKHITKK
RRVLLFVPSISTMKKVTKVLRKHHLNVEGVSADDPDRKQKVQQFRDYKYDVLVTTTILERGVTISNVQVGVLGAESTIFT
ESALVQISGRAGRHPDFFKGDVFFFHFGLTRSMKQAKKHIVKMNDTAEKEFSEK

Nucleotide


Download         Length: 1125 bp        

>NTDB_id=1010152 ABNG17_RS17160 WP_335349975.1 3182996..3184120(-) (comFA) [Bacillus pumilus strain RI06-95]
ATGGGGAAAACAACGGAATGTGGCTTTCTTTATGAATGGACGGGTCCACAAATGGAAGAAGCATGTCACTCGGAATTAAC
ATGGCAGGGAAACCTGTCGAAAGGACAAAAAAGAGCGTCAGAGAAATTGATCGAAGCGATAAAAAACAAATCTGATCTAC
TCATCTGGGCAGTTTGCGGGGCAGGGAAAACAGAGGTGCTTTTTCACGGAATAGAATATGCCTTACATCAAGGAATGAGT
GTCTGCATTGCGACACCTAGAACTGATGTTGTCCTTGAACTAGAGCCGCGGCTTAAAAAAGCTTTTCAAGGAATGAAAAT
AGCTGTTCTTTATGGAGGAAGTCCTCAAAGGTTCCAAATAGAAAAGTTAGTAATCGCTACAACTCACCAGTTGATGAGAT
ATAAACATGCATTTGATGTGCTCATTATAGATGAAGTCGACGCCTTCCCTTATTCAATCGATGGACGTCTCCAATTTGCT
GTTTTAAAGGCAATGAGAAAGAAAGGGGTTAGGGTTTATTTAAGTGCGACGCCGTCTAAGAAAATGATAAGAGATGTATC
TCGTGGACAACTAGAAGCCATAAAAATTCCTCTGCGCTTTCACCAACAACCTTTACCGGTCCCATCCTTTCAATGGATTG
GACATTGGAAGAAGAAATTAAAAAAGAATCAGCTCCCACCTAAAGTAATGAATTGGATGCAGAAACATATTACAAAAAAG
AGAAGGGTTTTACTTTTTGTTCCTTCTATTTCTACTATGAAGAAGGTAACGAAGGTTCTTAGAAAGCACCATTTAAATGT
AGAAGGGGTGTCTGCTGATGATCCAGATAGGAAACAAAAGGTCCAGCAATTCAGAGATTACAAATACGATGTACTAGTTA
CAACCACAATTCTAGAAAGAGGTGTAACCATTTCAAATGTGCAAGTGGGGGTACTAGGTGCAGAATCTACTATCTTTACA
GAAAGTGCACTTGTTCAGATTTCTGGTAGAGCAGGTAGACATCCCGATTTTTTTAAAGGAGATGTTTTCTTTTTTCATTT
TGGTTTAACGAGAAGTATGAAGCAAGCAAAGAAGCATATTGTAAAAATGAATGATACAGCTGAAAAAGAGTTCTCCGAAA
AATAA

Domains

Predicted by InterproScan.

Type III restriction enzyme, res subunit (ResIII)

(31-179)

Helicase conserved C-terminal domain (Helicase_C)

(235-334)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Bacillus subtilis subsp. subtilis str. 168

57.995

98.663

0.572
  comFA Latilactobacillus sakei subsp. sakei 23K

39.459

98.93

0.39
  comFA/cflA Streptococcus mitis SK321

40.395

94.652

0.382
  comFA/cflA Streptococcus pneumoniae Rx1

39.831

94.652

0.377
  comFA/cflA Streptococcus pneumoniae D39

39.831

94.652

0.377
  comFA/cflA Streptococcus pneumoniae R6

39.831

94.652

0.377
  comFA/cflA Streptococcus pneumoniae TIGR4

39.548

94.652

0.374
  comFA/cflA Streptococcus mitis NCTC 12261

39.266

94.652

0.372
  comFA Lactococcus lactis subsp. cremoris KW2

37.883

95.989

0.364

Multiple sequence alignment