Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   ABNG17_RS17170 Genome accession   NZ_CP158181
Coordinates   3185555..3186244 (-) Length   229 a.a.
NCBI ID   WP_008348273.1    Uniprot ID   A0A5K1NCW2
Organism   Bacillus pumilus strain RI06-95     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3180555..3191244
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABNG17_RS17135 (ABNG17_17120) - 3180633..3181115 (-) 483 WP_050944342.1 flagellar protein FlgN -
  ABNG17_RS17140 (ABNG17_17125) flgM 3181134..3181397 (-) 264 WP_003213252.1 flagellar biosynthesis anti-sigma factor FlgM -
  ABNG17_RS17145 (ABNG17_17130) - 3181477..3181896 (-) 420 WP_003212865.1 TIGR03826 family flagellar region protein -
  ABNG17_RS17150 (ABNG17_17135) comFC 3181953..3182639 (-) 687 WP_212045588.1 ComF family protein Machinery gene
  ABNG17_RS17155 (ABNG17_17140) - 3182636..3182929 (-) 294 WP_050944343.1 competence protein ComFB -
  ABNG17_RS17160 (ABNG17_17145) comFA 3182996..3184120 (-) 1125 WP_335349975.1 DEAD/DEAH box helicase Machinery gene
  ABNG17_RS17165 (ABNG17_17150) - 3184495..3185337 (-) 843 WP_003213402.1 DegV family protein -
  ABNG17_RS17170 (ABNG17_17155) degU 3185555..3186244 (-) 690 WP_008348273.1 two-component system response regulator DegU Regulator
  ABNG17_RS17175 (ABNG17_17160) degS 3186309..3187484 (-) 1176 WP_003213166.1 sensor histidine kinase Regulator
  ABNG17_RS17180 (ABNG17_17165) - 3187706..3188374 (+) 669 WP_003212936.1 YigZ family protein -
  ABNG17_RS17185 (ABNG17_17170) - 3188359..3189447 (+) 1089 WP_212045589.1 LCP family protein -
  ABNG17_RS17190 (ABNG17_17175) - 3189482..3190549 (-) 1068 WP_003212692.1 MraY family glycosyltransferase -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25852.54 Da        Isoelectric Point: 5.9436

>NTDB_id=1010153 ABNG17_RS17170 WP_008348273.1 3185555..3186244(-) (degU) [Bacillus pumilus strain RI06-95]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVELYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVADGGSYLHPKVTHNLVNEFRRLATSGVSAHPQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=1010153 ABNG17_RS17170 WP_008348273.1 3185555..3186244(-) (degU) [Bacillus pumilus strain RI06-95]
GTGACTAAAGTAAATATTGTAATTATTGATGATCACCAATTATTCCGTGAAGGTGTCAAACGGATTTTAGATTTTGAACC
TACTTTTGAAGTAGTTGCAGAAGGAGACGACGGAGACGAAGCTGCACGTATCGTAGAACACTATCATCCGGATGTTGTCA
TTATGGACATTAATATGCCGAATGTAAATGGTGTAGAGGCTACAAAGCAGCTAGTTGAGCTTTATCCCGAATCAAAAGTC
ATTATTCTATCTATTCATGATGATGAAAACTATGTGACACATGCATTGAAAACAGGAGCAAGAGGCTACCTGTTAAAAGA
AATGGATGCAGACACGCTCATTGAAGCAGTGAAAGTCGTAGCTGACGGAGGATCTTATTTACATCCGAAAGTTACTCATA
ACTTAGTAAATGAATTCCGACGCCTAGCGACTAGTGGCGTTTCAGCACATCCACAGCATGAAGTATATCCTGAAATTCGC
AGACCACTTCATATCTTAACAAGACGTGAGTGCGAAGTACTTCAAATGTTAGCTGACGGAAAGAGCAATAGAGGAATTGG
TGAGTCGCTCTTTATTAGTGAGAAAACAGTCAAAAACCACGTGAGTAACATTTTACAAAAAATGAATGTAAACGACCGTA
CACAAGCTGTTGTTGTAGCAATTAAGAACGGCTGGGTAGAAATGAGATAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(165-220)

Response regulator receiver domain (Response_reg)

(6-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5K1NCW2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

99.563

100

0.996

Multiple sequence alignment