Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   ABN702_RS20440 Genome accession   NZ_CP158164
Coordinates   4009082..4009612 (+) Length   176 a.a.
NCBI ID   WP_386644773.1    Uniprot ID   -
Organism   Bacillus sp. CSS-39     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4004082..4014612
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABN702_RS20410 (ABN702_20370) yyaC 4004212..4004850 (-) 639 WP_417898439.1 spore protease YyaC -
  ABN702_RS20415 (ABN702_20375) - 4004948..4005982 (+) 1035 WP_417898440.1 GerAB/ArcD/ProY family transporter -
  ABN702_RS20420 (ABN702_20380) - 4006072..4006953 (+) 882 WP_417898441.1 mechanosensitive ion channel family protein -
  ABN702_RS20425 (ABN702_20385) - 4006991..4007191 (+) 201 WP_417898442.1 DUF951 domain-containing protein -
  ABN702_RS20430 (ABN702_20390) ychF 4007526..4008626 (+) 1101 WP_417898443.1 redox-regulated ATPase YchF -
  ABN702_RS20435 (ABN702_20395) rpsF 4008746..4009036 (+) 291 WP_386644776.1 30S ribosomal protein S6 -
  ABN702_RS20440 (ABN702_20400) ssbA 4009082..4009612 (+) 531 WP_386644773.1 single-stranded DNA-binding protein Machinery gene
  ABN702_RS20445 (ABN702_20405) rpsR 4009686..4009925 (+) 240 WP_204413332.1 30S ribosomal protein S18 -
  ABN702_RS20450 (ABN702_20410) - 4010091..4011017 (+) 927 WP_417898444.1 YybS family protein -
  ABN702_RS20455 (ABN702_20415) - 4011491..4013461 (+) 1971 WP_417898445.1 DHH family phosphoesterase -
  ABN702_RS20460 (ABN702_20420) rplI 4013458..4013907 (+) 450 WP_417898446.1 50S ribosomal protein L9 -

Sequence

Protein


Download         Length: 176 a.a.        Molecular weight: 19412.12 Da        Isoelectric Point: 4.7920

>NTDB_id=1010054 ABN702_RS20440 WP_386644773.1 4009082..4009612(+) (ssbA) [Bacillus sp. CSS-39]
MLNRVVLVGRLTKDPELRYTPSGVAVATFTLAVNRTFQNQQGEREADFINCVVWRKQAENAANFLKKGSLAGVDGRIQTR
NYEGQDGKRVYVTEVVAEGVQFLEPKGSGGSGGSGGYNNNRPNPNQDQGYGSSPFGYDQNQQQRSNNNNQGYTRVDDDPF
KNDGQPIDISDDDLPF

Nucleotide


Download         Length: 531 bp        

>NTDB_id=1010054 ABN702_RS20440 WP_386644773.1 4009082..4009612(+) (ssbA) [Bacillus sp. CSS-39]
ATGTTAAATCGCGTAGTATTGGTTGGTCGCTTAACGAAAGACCCTGAATTGCGCTATACCCCAAGTGGAGTGGCGGTTGC
TACTTTTACTTTGGCAGTAAATCGTACGTTCCAGAATCAGCAGGGCGAACGCGAAGCTGATTTTATAAACTGTGTAGTTT
GGAGAAAACAAGCGGAAAACGCGGCGAACTTCCTGAAAAAAGGAAGTTTGGCAGGTGTTGACGGCAGAATCCAGACGCGC
AATTATGAAGGCCAAGATGGAAAACGTGTATACGTAACGGAAGTAGTGGCAGAAGGTGTTCAATTCTTGGAGCCTAAAGG
ATCTGGTGGTTCTGGCGGTTCTGGAGGATATAACAACAATCGTCCTAATCCAAATCAAGATCAAGGCTATGGTTCATCTC
CGTTTGGGTACGATCAGAACCAACAACAACGTAGCAATAACAACAACCAAGGTTATACTCGTGTTGATGACGACCCATTC
AAGAATGATGGTCAACCTATCGATATTTCTGACGACGATCTTCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

73.034

100

0.739
  ssb Latilactobacillus sakei subsp. sakei 23K

58.333

100

0.597
  ssbB Bacillus subtilis subsp. subtilis str. 168

64.151

60.227

0.386
  ssb Neisseria gonorrhoeae MS11

34.973

100

0.364
  ssb Glaesserella parasuis strain SC1401

34.973

100

0.364

Multiple sequence alignment