Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   P303_RS01725 Genome accession   NZ_CP006740
Coordinates   352517..354037 (+) Length   506 a.a.
NCBI ID   WP_038228869.1    Uniprot ID   -
Organism   Xylella fastidiosa MUL0034     
Function   promote branch migration; interact with DprA; integration of tDNA (predicted from homology)   
Homologous recombination

Genomic Context

Location: 347517..359037
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P303_RS01695 (P303_01770) rpsM 348331..348687 (+) 357 WP_004090134.1 30S ribosomal protein S13 -
  P303_RS01700 (P303_01775) rpsK 348703..349095 (+) 393 WP_004090135.1 30S ribosomal protein S11 -
  P303_RS01705 (P303_01780) rpsD 349110..349736 (+) 627 WP_038228862.1 30S ribosomal protein S4 -
  P303_RS01710 (P303_01785) rpoA 349791..350789 (+) 999 WP_004090142.1 DNA-directed RNA polymerase subunit alpha -
  P303_RS01715 (P303_01790) rplQ 350921..351301 (+) 381 WP_004090145.1 50S ribosomal protein L17 -
  P303_RS01720 (P303_01795) - 352246..352506 (+) 261 WP_038228863.1 accessory factor UbiK family protein -
  P303_RS01725 (P303_01800) comM 352517..354037 (+) 1521 WP_038228869.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  P303_RS14350 (P303_01805) - 355264..355386 (+) 123 WP_268987971.1 hypothetical protein -
  P303_RS01730 (P303_01810) - 356388..357521 (+) 1134 WP_080679666.1 triacylglycerol lipase -
  P303_RS01735 (P303_01815) - 357522..358574 (+) 1053 WP_040123080.1 lipase secretion chaperone -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 54644.74 Da        Isoelectric Point: 8.0750

>NTDB_id=100985 P303_RS01725 WP_038228869.1 352517..354037(+) (comM) [Xylella fastidiosa MUL0034]
MSLALVHSRARAGVFAPSVRVEVHLSGGLPATQIVGLPEAAVRESRDRVRAALLCACFEYPARRITINLAPADLPKEGGR
FDLPIALGILAASGQLPLDALAGKEFLGELALTGELRSVDSVLPAALAASQAGHWLVIPESNGAEAAIAGCCEAYTARTL
LEVCAGLCGKTLLLAAQRFEVKSDVLHDIPDISDVRGQEEARRVLEIAAAGGHHLLLIGSPGCDKTLLASRLPGLLPPAS
EQEALESASIASVSGHDLNLTHWRRRPYRAPHHSASAVALIGGGVQARPGEISLAHNGVLFMDELPEWQRKTLEALREPM
ESGVVTIARATRSVDYPARFQLVAAMNPCPCGWAGDSSGRCQCGLDAIRRYRRRISGPLLDRIDLQLEIPRLAPQLLRPS
TPRGEHSVTVRRRVTDSRTLQYNRQAGLNAHLGQAATERHCCLDATDQRLLERAIEQLQLSARSMQRILRVARTIADLDG
STLITSMHLHEAIGYRRFDRTTFGIA

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=100985 P303_RS01725 WP_038228869.1 352517..354037(+) (comM) [Xylella fastidiosa MUL0034]
ATGAGCTTGGCTTTGGTGCATAGCCGTGCCCGTGCTGGAGTTTTTGCACCCTCAGTTAGGGTTGAAGTACATTTGTCGGG
TGGCCTGCCTGCAACACAGATCGTTGGTTTGCCTGAGGCTGCTGTACGTGAATCTCGAGATCGAGTGCGTGCCGCGTTAT
TGTGTGCTTGCTTTGAATATCCGGCCCGACGTATCACCATTAATTTGGCGCCTGCTGACTTACCGAAGGAGGGCGGGCGC
TTTGATTTGCCGATTGCATTAGGAATCTTGGCCGCCAGCGGTCAACTGCCACTTGATGCTTTAGCAGGTAAGGAGTTCCT
CGGTGAACTTGCACTCACTGGAGAACTGCGTTCGGTTGACAGTGTGCTACCTGCGGCTTTAGCTGCATCACAGGCAGGAC
ACTGGCTGGTGATACCAGAAAGTAATGGTGCTGAAGCAGCAATCGCAGGGTGTTGTGAAGCTTATACTGCTCGCACTCTA
CTTGAGGTTTGTGCTGGCTTGTGCGGTAAAACATTATTGCTGGCTGCTCAGAGATTCGAAGTTAAGTCTGATGTATTGCA
TGATATTCCTGATATTTCTGACGTGCGCGGCCAAGAGGAGGCACGCCGTGTTCTTGAAATTGCTGCGGCTGGTGGACATC
ATTTGTTGCTGATTGGTAGTCCTGGTTGTGATAAAACTCTTTTAGCCTCAAGATTGCCAGGCTTATTACCGCCAGCAAGC
GAGCAAGAAGCATTGGAGAGTGCGTCGATTGCCTCGGTGAGTGGGCATGATTTGAATCTGACTCATTGGCGACGACGTCC
CTATCGTGCTCCGCATCATAGTGCTAGCGCAGTTGCACTGATCGGTGGTGGGGTACAGGCACGTCCTGGTGAGATCTCGC
TCGCGCATAATGGCGTGCTATTTATGGATGAATTGCCCGAATGGCAACGCAAAACCTTGGAAGCCTTACGTGAACCCATG
GAATCTGGTGTAGTGACGATTGCTCGTGCCACACGTAGTGTGGATTATCCTGCCCGTTTTCAGTTAGTAGCTGCTATGAA
TCCTTGCCCTTGTGGTTGGGCAGGTGATTCGAGTGGACGTTGTCAATGTGGTTTGGATGCAATTCGACGTTATCGTCGCC
GTATTTCTGGTCCGTTATTGGACCGCATTGATCTACAGTTGGAAATACCACGGTTGGCACCGCAGCTACTGCGTCCTAGT
ACACCGCGTGGTGAACATAGTGTTACAGTGCGGAGGCGTGTTACTGATTCCAGGACTTTGCAATATAATCGACAAGCGGG
GCTTAATGCGCATCTGGGCCAAGCCGCAACCGAGCGTCATTGCTGTTTGGATGCGACCGACCAGCGGTTGCTGGAACGCG
CGATCGAACAGTTGCAGCTATCGGCACGTTCAATGCAACGGATTCTACGCGTGGCACGCACCATTGCCGATTTGGATGGT
AGCACATTAATCACCAGCATGCATTTGCATGAAGCGATCGGGTATCGTCGATTTGACCGTACAACCTTTGGCATTGCTTA
A

Domains

Predicted by InterProScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(404-496)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(191-393)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae O1 biovar El Tor strain E7946

53.6

98.814

0.53
  comM Vibrio cholerae strain A1552

53.6

98.814

0.53
  comM Vibrio campbellii strain DS40M4

53.4

98.814

0.528
  comM Acinetobacter baylyi ADP1

53.119

98.221

0.522
  comM Haemophilus influenzae Rd KW20

52.087

99.407

0.518
  comM Glaesserella parasuis strain SC1401

51.683

99.802

0.516
  comM Legionella pneumophila str. Paris

49.8

98.814

0.492
  comM Legionella pneumophila strain ERS1305867

49.8

98.814

0.492
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

43.08

100

0.437

Multiple sequence alignment