Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB   Type   Regulator
Locus tag   ABKJ27_RS09175 Genome accession   NZ_CP157578
Coordinates   1892449..1893798 (-) Length   449 a.a.
NCBI ID   WP_410011747.1    Uniprot ID   -
Organism   Streptococcus sp. KHUD_011     
Function   transport of ComC (predicted from homology)   
Competence regulation

Genomic Context

Location: 1887449..1898798
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABKJ27_RS09160 (ABKJ27_09170) - 1887634..1891359 (-) 3726 WP_410011746.1 phosphoribosylformylglycinamidine synthase -
  ABKJ27_RS09165 (ABKJ27_09175) - 1891427..1891570 (-) 144 WP_078228447.1 phosphoribosylaminoimidazolesuccinocarboxamide synthase -
  ABKJ27_RS09170 (ABKJ27_09180) purC 1891572..1892279 (-) 708 WP_237447385.1 phosphoribosylaminoimidazolesuccinocarboxamide synthase -
  ABKJ27_RS09175 (ABKJ27_09185) comB 1892449..1893798 (-) 1350 WP_410011747.1 competence pheromone export protein ComB Regulator
  ABKJ27_RS09180 (ABKJ27_09190) comA 1893811..1895964 (-) 2154 WP_410011748.1 peptide cleavage/export ABC transporter ComA Regulator
  ABKJ27_RS09185 (ABKJ27_09195) - 1896508..1896663 (-) 156 WP_000732248.1 hypothetical protein -
  ABKJ27_RS09190 (ABKJ27_09200) - 1896688..1896840 (-) 153 WP_001180498.1 class IIb bacteriocin, lactobin A/cerein 7B family -
  ABKJ27_RS09195 (ABKJ27_09205) - 1896964..1897137 (-) 174 WP_000180829.1 class IIb bacteriocin, lactobin A/cerein 7B family -
  ABKJ27_RS09200 (ABKJ27_09210) - 1897171..1897326 (-) 156 WP_049499436.1 hypothetical protein -
  ABKJ27_RS09205 (ABKJ27_09215) - 1897337..1897465 (-) 129 WP_049499438.1 smi_0059.1 family bacteriocin-like peptide -
  ABKJ27_RS09210 (ABKJ27_09220) - 1897962..1898693 (-) 732 WP_410011749.1 response regulator transcription factor -

Sequence

Protein


Download         Length: 449 a.a.        Molecular weight: 49869.88 Da        Isoelectric Point: 5.4063

>NTDB_id=1007495 ABKJ27_RS09175 WP_410011747.1 1892449..1893798(-) (comB) [Streptococcus sp. KHUD_011]
MKPEFLESAEFYNRRYHNFSSRVIVPMSLLLLFLLGFATFAEKEMSLSTRATVEPSRILASIQSTSNNRILINHLEENKL
VKKGELLVQYQEGAEGVQAEAYASQLDMLKDQKKQLEYLQKSLQEGTDYFPEEDKFGYQATFRDYISQAGSLRASTSQQN
ETIASQNAAASQTQAEIGNLISQTEAKIRDYQTAKSAIETGASLASQNLAYSLYQSYKSQVEENPQAKAQAVAQVEAQLS
QLESSLATYRVQYAGSGTQQAYASGLSSQLESLKSQHLAKVGQELTLLDQKILEVESGKKVQGNLLDKGKITASEDGVLH
LNPETSDSTMVAEGALLAQLYPSLEREGKAKLTAYLSSKDVARIKVGDSVRYTTTHDAKNQLFLDSTITSIDATATKTEK
GNFFKIEAETNLTSEQAEKLRYGVEGRLQMITGKKSYLRYYLDQFLNKE

Nucleotide


Download         Length: 1350 bp        

>NTDB_id=1007495 ABKJ27_RS09175 WP_410011747.1 1892449..1893798(-) (comB) [Streptococcus sp. KHUD_011]
ATGAAACCAGAATTTTTAGAAAGTGCGGAGTTTTATAATCGTCGTTATCATAATTTTTCCAGTCGGGTGATTGTACCCAT
GTCCCTTCTGCTTTTGTTTTTACTTGGATTTGCAACATTTGCAGAGAAGGAGATGAGTTTGTCTACAAGAGCGACTGTCG
AGCCTAGTCGTATTCTTGCAAGTATCCAGTCTACTAGCAACAATCGCATTCTTATCAATCATTTGGAAGAAAATAAGCTG
GTTAAGAAGGGGGAGCTTCTGGTTCAATATCAAGAAGGGGCAGAGGGTGTCCAAGCGGAGGCCTATGCTAGTCAGTTGGA
CATGCTCAAGGATCAAAAAAAGCAATTGGAATATTTGCAAAAGAGCCTGCAAGAAGGGACTGATTACTTTCCAGAGGAGG
ATAAGTTTGGCTACCAAGCCACCTTTCGTGACTACATCAGCCAAGCAGGTAGTCTTAGGGCTAGTACATCGCAACAAAAT
GAGACCATCGCGTCCCAGAATGCAGCAGCTAGCCAAACCCAAGCCGAAATCGGCAACCTCATCAGCCAAACAGAGGCTAA
AATTCGCGATTACCAGACAGCTAAGTCAGCTATTGAAACAGGTGCTTCCTTGGCCAGTCAGAATCTAGCCTACTCTCTCT
ACCAGTCCTATAAGTCTCAGGTTGAGGAAAATCCGCAAGCTAAGGCCCAAGCAGTTGCGCAGGTTGAAGCGCAGCTTTCT
CAGTTAGAATCTAGTCTTGCTACTTACCGTGTCCAGTATGCGGGTTCAGGTACCCAGCAAGCCTATGCGTCTGGTTTAAG
CAGTCAATTGGAGTCTCTCAAATCCCAACACTTGGCAAAGGTTGGTCAGGAATTGACCCTTCTAGACCAGAAAATCTTGG
AGGTGGAGTCAGGTAAGAAGGTACAGGGAAATCTTTTAGACAAGGGGAAAATTACGGCGAGTGAGGATGGGGTGCTTCAT
CTTAATCCTGAGACCAGTGATTCTACCATGGTAGCAGAGGGGGCTCTACTAGCTCAACTCTATCCATCTTTGGAAAGAGA
AGGCAAAGCCAAACTAACAGCTTATCTTAGTTCAAAGGATGTAGCAAGGATCAAGGTAGGTGATTCTGTTCGCTATACGA
CGACTCATGATGCCAAGAATCAACTTTTCCTAGATTCTACTATTACAAGTATTGATGCGACAGCTACTAAGACTGAAAAA
GGGAATTTCTTTAAAATCGAGGCGGAGACTAATCTAACTTCGGAGCAGGCTGAAAAACTTCGGTACGGGGTGGAAGGTCG
CCTGCAGATGATTACGGGCAAGAAAAGTTACCTACGTTATTATTTAGATCAATTTTTGAACAAAGAGTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB Streptococcus mitis SK321

96.437

100

0.964
  comB Streptococcus pneumoniae TIGR4

95.1

100

0.951
  comB Streptococcus pneumoniae D39

94.878

100

0.949
  comB Streptococcus mitis NCTC 12261

94.878

100

0.949
  comB Streptococcus pneumoniae R6

94.878

100

0.949
  comB Streptococcus pneumoniae Rx1

94.878

100

0.949
  comB Streptococcus gordonii str. Challis substr. CH1

55.333

100

0.555

Multiple sequence alignment