Detailed information    

insolico Bioinformatically predicted

Overview


Name   pilZ   Type   Machinery gene
Locus tag   G3R42_RS10325 Genome accession   NZ_LR739068
Coordinates   2189510..2189866 (+) Length   118 a.a.
NCBI ID   WP_003091119.1    Uniprot ID   A0A0H2ZD30
Organism   Pseudomonas aeruginosa strain PcyII-29 isolate PcyII-29     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context


Location: 2184510..2194866
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G3R42_RS10300 (PERCYII29_2061) fabF 2184722..2185966 (+) 1245 WP_003104132.1 beta-ketoacyl-ACP synthase II -
  G3R42_RS10305 (PERCYII29_2062) pabC 2185966..2186781 (+) 816 WP_003104130.1 aminodeoxychorismate lyase -
  G3R42_RS10310 (PERCYII29_2063) mltG 2186787..2187836 (+) 1050 WP_003104128.1 endolytic transglycosylase MltG -
  G3R42_RS10315 (PERCYII29_2064) tmk 2187865..2188497 (+) 633 WP_003091125.1 dTMP kinase -
  G3R42_RS10320 (PERCYII29_2065) - 2188490..2189476 (+) 987 WP_003104126.1 DNA polymerase III subunit delta' -
  G3R42_RS10325 (PERCYII29_2066) pilZ 2189510..2189866 (+) 357 WP_003091119.1 PilZ domain-containing protein Machinery gene
  G3R42_RS10330 (PERCYII29_2067) - 2189881..2190657 (+) 777 WP_003091117.1 TatD family hydrolase -
  G3R42_RS10335 (PERCYII29_2069) - 2190883..2192016 (-) 1134 WP_003104119.1 aminotransferase class V-fold PLP-dependent enzyme -
  G3R42_RS10340 (PERCYII29_2070) - 2192102..2192740 (+) 639 WP_003091114.1 TetR/AcrR family transcriptional regulator -
  G3R42_RS10345 (PERCYII29_2071) - 2192890..2193012 (+) 123 Protein_2045 radical SAM protein -

Sequence


Protein


Download         Length: 118 a.a.        Molecular weight: 12903.98 Da        Isoelectric Point: 9.9969

>NTDB_id=1007232 G3R42_RS10325 WP_003091119.1 2189510..2189866(+) (pilZ) [Pseudomonas aeruginosa strain PcyII-29 isolate PcyII-29]
MSLPPNLGPRNGILSLTIKDKSVLYAAYMPFIRNGGLFIPTNKNYKLGDEVFMLLNLMEEPEKIPVAGKVVWITPKGAQG
NRAAGIGVQFNDGDNTARNKIETYLAGALKSDRPTHTM

Nucleotide


Download         Length: 357 bp        

>NTDB_id=1007232 G3R42_RS10325 WP_003091119.1 2189510..2189866(+) (pilZ) [Pseudomonas aeruginosa strain PcyII-29 isolate PcyII-29]
ATGAGTTTGCCACCCAATCTGGGGCCGCGTAACGGCATCCTGTCCTTGACCATCAAGGACAAGTCCGTGCTGTACGCCGC
CTACATGCCGTTCATCAGGAACGGCGGGCTGTTCATTCCCACCAACAAGAACTACAAGCTCGGCGACGAAGTCTTCATGC
TGCTCAACCTGATGGAAGAGCCGGAGAAGATCCCGGTGGCCGGCAAGGTCGTCTGGATCACCCCGAAGGGCGCCCAGGGC
AACCGTGCGGCTGGCATCGGCGTGCAGTTCAACGACGGTGACAACACCGCCCGCAACAAGATCGAAACCTACCTGGCCGG
GGCGCTGAAGTCGGACCGGCCGACCCACACGATGTAA

Domains


Predicted by InterProScan.

(17-106)


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure
  AlphaFold DB A0A0H2ZD30

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilZ Legionella pneumophila str. Paris

49.074

91.525

0.449

  pilZ Legionella pneumophila strain ERS1305867

49.074

91.525

0.449


Multiple sequence alignment