Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGD   Type   Machinery gene
Locus tag   GPW68_RS00810 Genome accession   NZ_LR738723
Coordinates   123672..124079 (+) Length   135 a.a.
NCBI ID   WP_074389247.1    Uniprot ID   -
Organism   Streptococcus suis isolate GD-0088     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 118672..129079
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GPW68_RS00785 - 120073..120438 (+) 366 WP_023369079.1 DUF1033 family protein -
  GPW68_RS00790 - 120473..121423 (-) 951 Protein_118 S66 family peptidase -
  GPW68_RS00795 comGA 121509..122459 (+) 951 WP_044760311.1 competence type IV pilus ATPase ComGA Machinery gene
  GPW68_RS00800 comGB 122371..123408 (+) 1038 WP_257116212.1 competence type IV pilus assembly protein ComGB Machinery gene
  GPW68_RS00805 comGC 123410..123691 (+) 282 WP_074389246.1 competence type IV pilus major pilin ComGC Machinery gene
  GPW68_RS00810 comGD 123672..124079 (+) 408 WP_074389247.1 competence type IV pilus minor pilin ComGD Machinery gene
  GPW68_RS00815 comGE 124051..124344 (+) 294 WP_024413203.1 competence type IV pilus minor pilin ComGE Machinery gene
  GPW68_RS00820 comGF/cglF 124331..124765 (+) 435 WP_074389248.1 competence type IV pilus minor pilin ComGF Machinery gene
  GPW68_RS00825 comGG 124743..125153 (+) 411 WP_074389249.1 competence type IV pilus minor pilin ComGG -
  GPW68_RS00830 - 125634..126059 (-) 426 WP_226319165.1 ArpU family phage packaging/lysis transcriptional regulator -
  GPW68_RS00835 - 126383..126958 (-) 576 WP_074392204.1 hypothetical protein -
  GPW68_RS11485 - 126979..127152 (-) 174 WP_171840772.1 hypothetical protein -
  GPW68_RS00840 - 127466..128902 (-) 1437 WP_156721189.1 phage/plasmid primase, P4 family -

Sequence

Protein


Download         Length: 135 a.a.        Molecular weight: 15253.49 Da        Isoelectric Point: 9.3105

>NTDB_id=1007022 GPW68_RS00810 WP_074389247.1 123672..124079(+) (comGD) [Streptococcus suis isolate GD-0088]
MLRRKNKAFTLLESLLTLFIVSFLAVSLSGTVQTAFRSVQEEIFLWEFEAIYKDSQKLAASSHQKVNLAIGGQEVTNGYQ
AVEVPRNIEVLEGKTITLEEDGGNSSLTKIRFRLSQKIVTYQLYIGSGRYKKTEE

Nucleotide


Download         Length: 408 bp        

>NTDB_id=1007022 GPW68_RS00810 WP_074389247.1 123672..124079(+) (comGD) [Streptococcus suis isolate GD-0088]
ATGCTAAGGCGAAAAAATAAGGCTTTCACGCTTTTGGAAAGTCTACTGACCTTATTTATTGTCAGTTTTTTAGCAGTTTC
TTTGTCGGGAACGGTACAGACGGCTTTTCGGTCTGTCCAGGAAGAGATTTTTCTTTGGGAGTTTGAAGCCATCTATAAAG
ACAGTCAGAAATTGGCAGCCAGTTCCCACCAAAAAGTGAACCTTGCTATCGGTGGACAGGAGGTTACAAATGGTTATCAG
GCTGTAGAGGTACCCAGAAATATAGAAGTGTTGGAAGGGAAAACCATCACACTTGAAGAAGATGGTGGAAATTCTTCTCT
GACCAAGATTCGTTTTCGCCTTAGTCAAAAAATAGTCACGTATCAATTATATATAGGGAGTGGTCGCTATAAGAAAACAG
AAGAATAA

Domains

Predicted by InterProScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(3-28)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGD Streptococcus gordonii str. Challis substr. CH1

49.606

94.074

0.467
  comGD/cglD Streptococcus pneumoniae TIGR4

48.062

95.556

0.459
  comGD/cglD Streptococcus pneumoniae Rx1

48.062

95.556

0.459
  comGD/cglD Streptococcus pneumoniae D39

48.062

95.556

0.459
  comGD/cglD Streptococcus pneumoniae R6

48.062

95.556

0.459
  comGD/cglD Streptococcus mitis NCTC 12261

47.287

95.556

0.452
  comGD/cglD Streptococcus mitis SK321

46.512

95.556

0.444
  comGD Streptococcus mutans UA140

46.512

95.556

0.444
  comGD Streptococcus mutans UA159

46.512

95.556

0.444
  comGD Lactococcus lactis subsp. cremoris KW2

38.281

94.815

0.363