Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilY1   Type   Machinery gene
Locus tag   ABLB99_RS01625 Genome accession   NZ_CP157447
Coordinates   348406..352590 (+) Length   1394 a.a.
NCBI ID   WP_017392606.1    Uniprot ID   -
Organism   Acinetobacter nosocomialis strain XH1727     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 343406..357590
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABLB99_RS01595 (ABLB99_01595) gmk 343698..344327 (-) 630 WP_002051739.1 guanylate kinase -
  ABLB99_RS01600 (ABLB99_01600) ispH 344450..345400 (+) 951 WP_002051768.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  ABLB99_RS01605 (ABLB99_01605) fimU 345569..346042 (+) 474 WP_106465172.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  ABLB99_RS01610 (ABLB99_01610) pilV 346036..346596 (+) 561 WP_079377028.1 type IV pilus modification protein PilV Machinery gene
  ABLB99_RS01615 (ABLB99_01615) pilW 346596..347594 (+) 999 WP_004884688.1 PilW family protein Machinery gene
  ABLB99_RS01620 (ABLB99_01620) pilX 347591..348406 (+) 816 WP_004711686.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  ABLB99_RS01625 (ABLB99_01625) pilY1 348406..352590 (+) 4185 WP_017392606.1 PilC/PilY family type IV pilus protein Machinery gene
  ABLB99_RS01630 (ABLB99_01630) pilY2 352603..353085 (+) 483 WP_004884685.1 type IV pilin protein Machinery gene
  ABLB99_RS01635 (ABLB99_01635) pilE 353082..353507 (+) 426 WP_023188119.1 type IV pilin protein Machinery gene
  ABLB99_RS01640 (ABLB99_01640) rpsP 353654..353905 (+) 252 WP_000260334.1 30S ribosomal protein S16 -
  ABLB99_RS01645 (ABLB99_01645) rimM 353925..354473 (+) 549 WP_004711694.1 ribosome maturation factor RimM -
  ABLB99_RS01650 (ABLB99_01650) trmD 354520..355275 (+) 756 WP_004884678.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  ABLB99_RS01655 (ABLB99_01655) rplS 355491..355859 (+) 369 WP_002051668.1 50S ribosomal protein L19 -
  ABLB99_RS01660 (ABLB99_01660) - 355911..356852 (-) 942 WP_079377864.1 triacylglycerol lipase -

Sequence

Protein


Download         Length: 1394 a.a.        Molecular weight: 149196.17 Da        Isoelectric Point: 7.2258

>NTDB_id=1006919 ABLB99_RS01625 WP_017392606.1 348406..352590(+) (pilY1) [Acinetobacter nosocomialis strain XH1727]
MGNIMKLHFKPNKLWYAIYSTSMTFTWLMSSSVVQASDLQIYASPTAGKKTIVMMLDTSGSMGRTIQSGYSIYDDYGITS
CSTTYVNSTTTPSYRRYYCGVSSNTTNSKVTNLATGCEKQADNSYRCYDRLTRLKDGMFSFLENNNPIFNNVSVGLGHFS
TYSSGTTGDGSSGEILVPAANLGVVGSAQRVALKNAVAGLEASGGTPTANAYAEAAAYLMGTRTLSSTTANVAMYFKYYP
VLTQTSQTVYYACGNNSASGSTDNTKCTYTPTTIPSQSNLSNYSSNTTSSTNGNITTYTTYYYKTTGWFYPTTTYYYKTT
YSETKVTSSTPNYQSCTAYNSNGCTTWSAASLTNPTTDTYDTQCTVNTVAGTCVYQTKTILGTNSYSGFNSSVQSSKDPD
TNYTTYKSPLPPVSQRQSCDGQGVYILSDGEPTNNVNSSVLASALNLSSFSNSGGLSGGTNWDYMSNFAKALFNGGVIQS
DANNATNPANVSIQTAFVGFGSALNALSTTDAKNACKMSSRTQIDRSGDDACSPNQGTNAVSAPGYGNGGFFPTQSAQGV
TDSVIAFINNLGKVPLEPLTTGAISVPYDALNPKNLQEYGYLRAFEPDPANAYLTWRGNLKKYHVVLSGSNAGAFEANSG
GLVYDANGAFRSGTKDYWNSSSYNDGGKVFLGGAYSNVPLPTLGQPEEVNSQGNITKYYYAAKNKIRNLFTDVSTVATDG
SLTKISTTNTNLLKIPAAPAVNTNPFDTAANTASYVLGKFNSSTGQDVLKAFPVSLKLKLLNYLGYPTDITATALPSTLT
TSNAPYLSMGGSIHSFPVQLTYSGTLDQNGNLTSAREQSILYGSMEGGLHIVDASSGVEQMVFIPADILNDTVASKALVV
GQSDSTAPAQGMDGAWVSDPAYNITTTGSGSSAVSKVTAKQMNIYGGMRMGGSSYYGLNVLNPSSPQLMFRIGADQSDYS
RMGQSWSKPVLANIRYNGAIRRVMIVGGGYDQCYEKPNITLSDSCFSNGKAKGNAVYIIDAKTGERLWWASDTGSNNDNA
NMKHSIVSRISTLDRDGDGLVDHLYFGDLGGQVFRVDLNNNQTQTNSTYSSFGIRVVRLANLATNDTTNDSGNDYTGGNA
PRFYEPPTVTIHDYGVRSFITVGIASGDRSTPLDVYPIIGREGMSPSTALSGRPVNNVYGIIDRDFIKKNLMSLSDSQLE
TKDLIRSNLRKNPQILRAGETSVGQVFFPSTGIGQAGWYRSLSSTSNGTEKADNSFRIKGGMKAFEEPIAITGNLIVPVY
DPQGTGIVASDPCLPRVVGETDRQTYCLPFGVCLNTDGSINHNKEDNSGFGTDGTKNLNVIGSGVRNITFVPSEDNPSPQ
NSCGKLKLSGNEQGTGQWQCTSYLIPARWYERYR

Nucleotide


Download         Length: 4185 bp        

>NTDB_id=1006919 ABLB99_RS01625 WP_017392606.1 348406..352590(+) (pilY1) [Acinetobacter nosocomialis strain XH1727]
ATGGGGAATATCATGAAACTACATTTCAAACCAAATAAATTATGGTATGCCATCTATTCAACTTCGATGACATTTACATG
GCTTATGTCAAGTTCTGTAGTGCAGGCAAGTGATTTACAAATTTATGCCTCACCTACAGCAGGTAAAAAAACAATTGTTA
TGATGCTAGATACTTCTGGATCAATGGGGCGTACGATCCAGTCCGGTTATAGTATTTATGATGATTACGGTATTACAAGT
TGTTCAACTACTTATGTAAACTCAACAACTACTCCTAGTTATCGTCGGTATTATTGCGGGGTTTCCTCAAATACCACTAA
TAGCAAAGTAACTAATTTAGCAACCGGATGTGAGAAACAGGCAGATAATAGTTATCGTTGTTATGACCGGTTAACGCGCC
TAAAAGATGGTATGTTTTCTTTTTTAGAAAATAATAACCCGATATTTAATAATGTAAGTGTTGGATTGGGGCATTTCTCT
ACATACAGTAGTGGTACTACTGGTGATGGCAGTAGCGGCGAAATTTTGGTTCCAGCAGCAAATTTGGGCGTTGTAGGATC
TGCACAAAGAGTTGCATTAAAAAATGCTGTAGCTGGATTAGAAGCAAGTGGAGGAACGCCTACTGCTAATGCTTATGCTG
AGGCAGCAGCTTACTTAATGGGAACACGAACATTAAGCTCGACTACAGCAAATGTGGCAATGTATTTTAAATATTATCCA
GTTTTAACTCAGACGTCACAAACCGTTTACTATGCCTGTGGTAATAATTCAGCTAGTGGTTCAACAGATAATACAAAGTG
TACATATACGCCGACCACAATTCCAAGCCAGTCTAATTTATCTAACTATAGTAGTAATACTACAAGCTCAACAAATGGAA
ATATAACGACTTACACCACTTATTATTATAAAACGACTGGATGGTTTTATCCTACAACGACCTATTACTATAAAACTACT
TATAGTGAAACTAAAGTAACCAGTTCAACACCTAATTATCAAAGCTGTACAGCATATAACTCTAATGGATGTACTACTTG
GAGTGCGGCTTCTTTAACTAATCCAACAACAGATACCTATGATACGCAATGTACAGTTAATACAGTGGCTGGTACATGTG
TCTATCAAACTAAAACAATTTTAGGTACAAACAGTTATAGTGGATTTAATAGCTCCGTTCAAAGTTCAAAAGATCCAGAT
ACCAACTACACTACATATAAATCACCATTACCTCCCGTTAGTCAGCGTCAAAGTTGTGATGGACAAGGGGTTTATATTTT
GTCTGATGGTGAACCAACGAATAACGTAAACTCTTCTGTTTTAGCCTCTGCATTGAACCTTAGCTCGTTTAGTAATAGTG
GTGGACTGAGCGGTGGTACAAACTGGGATTATATGAGTAACTTCGCTAAGGCCTTATTTAATGGCGGGGTAATTCAAAGT
GATGCTAATAATGCTACAAACCCAGCTAATGTATCTATACAAACTGCTTTTGTTGGTTTTGGTTCAGCATTAAATGCCTT
GAGCACTACAGATGCGAAGAACGCTTGTAAAATGAGTTCTCGTACTCAAATAGATAGAAGTGGAGATGATGCATGTTCTC
CAAATCAGGGAACAAATGCTGTATCTGCCCCAGGTTATGGTAATGGTGGATTTTTTCCTACCCAAAGTGCGCAGGGAGTA
ACCGATAGCGTAATTGCATTTATTAATAACTTAGGGAAGGTGCCTTTAGAGCCTCTTACTACTGGTGCGATTTCTGTACC
TTATGATGCATTGAATCCTAAAAATCTACAGGAATATGGTTATTTACGGGCTTTTGAGCCAGATCCGGCAAATGCTTATC
TGACTTGGCGAGGTAACTTAAAAAAATATCATGTGGTTTTATCTGGTTCAAATGCTGGTGCATTTGAAGCGAACTCTGGT
GGACTGGTCTATGATGCAAATGGAGCATTCCGTAGTGGTACAAAAGATTATTGGAATAGTTCTAGTTATAATGATGGCGG
AAAAGTTTTCTTAGGAGGAGCCTATAGCAATGTACCATTACCAACTTTAGGTCAGCCAGAAGAGGTAAATTCTCAAGGTA
ATATTACTAAATATTATTATGCTGCAAAAAATAAAATCCGAAATCTGTTTACTGATGTTTCTACCGTGGCTACAGATGGT
AGTTTAACTAAAATATCAACTACAAATACTAACTTACTGAAAATTCCTGCTGCACCTGCTGTAAATACAAATCCTTTTGA
TACAGCGGCTAATACTGCAAGTTATGTGCTAGGAAAATTTAATAGCTCTACGGGACAAGATGTTTTGAAGGCATTTCCTG
TGAGCTTGAAATTAAAATTATTAAATTACTTGGGTTATCCGACAGATATTACGGCGACAGCTCTACCAAGCACATTAACC
ACATCAAATGCCCCTTATTTATCGATGGGCGGAAGTATCCACTCTTTTCCGGTACAGCTGACTTATAGTGGTACTTTAGA
TCAAAATGGAAATTTAACCAGTGCACGTGAGCAATCTATTCTTTACGGAAGTATGGAAGGAGGATTGCATATCGTAGATG
CCTCTTCTGGGGTTGAGCAAATGGTATTTATCCCAGCCGATATATTAAATGATACGGTAGCGTCTAAAGCTTTAGTGGTA
GGGCAAAGTGATTCAACAGCCCCTGCTCAAGGTATGGATGGAGCATGGGTATCGGATCCAGCATATAACATTACTACTAC
AGGTTCAGGTAGTTCAGCAGTATCAAAAGTTACTGCTAAACAAATGAATATTTATGGTGGAATGCGTATGGGGGGCAGTA
GCTATTATGGATTAAATGTATTAAATCCAAGTTCCCCACAATTAATGTTTAGAATAGGTGCAGATCAATCTGACTATAGC
CGTATGGGGCAAAGTTGGTCTAAGCCTGTACTTGCAAATATTCGTTATAACGGTGCGATTAGACGTGTCATGATTGTTGG
TGGTGGTTATGATCAATGCTATGAGAAACCAAATATCACGTTGAGTGACTCATGCTTTAGCAATGGTAAGGCAAAAGGAA
ATGCTGTCTATATTATCGATGCTAAAACCGGAGAGCGTTTATGGTGGGCCAGTGATACAGGTTCCAATAATGATAACGCT
AATATGAAGCATAGTATTGTTAGCCGTATTAGTACTTTGGACCGAGATGGTGATGGCTTAGTAGATCATTTGTATTTTGG
CGATTTAGGTGGACAAGTCTTTCGTGTAGATCTTAATAATAATCAGACTCAAACTAACTCGACTTATAGTAGTTTCGGTA
TAAGAGTTGTGAGATTGGCAAATCTGGCAACAAACGATACAACAAATGATAGTGGAAATGATTACACAGGTGGAAATGCC
CCTCGTTTTTATGAGCCGCCTACCGTAACAATTCATGATTATGGTGTTCGCTCATTTATTACGGTTGGTATCGCTTCTGG
TGATCGAAGTACACCACTAGATGTTTATCCAATTATTGGCCGGGAAGGTATGTCTCCTAGTACGGCGCTTAGTGGTCGAC
CTGTAAATAATGTTTATGGAATTATTGATAGAGACTTTATCAAAAAGAATTTAATGTCGTTAAGTGATAGTCAGCTTGAA
ACTAAGGATCTTATTCGCTCAAATCTGCGGAAAAACCCACAAATATTAAGAGCAGGCGAAACGAGCGTAGGGCAAGTTTT
CTTTCCAAGTACGGGTATAGGTCAAGCAGGTTGGTACCGATCACTTTCTAGTACGAGCAATGGTACTGAAAAAGCTGATA
ATAGCTTCCGTATTAAAGGGGGAATGAAAGCCTTTGAAGAACCAATAGCAATTACAGGTAATTTAATCGTTCCTGTCTAT
GATCCTCAAGGAACGGGTATTGTTGCGTCGGACCCTTGTTTACCACGTGTAGTAGGTGAAACAGATCGACAAACTTATTG
TCTACCATTTGGAGTGTGTCTGAATACTGATGGATCGATTAATCATAATAAGGAAGATAATAGTGGTTTTGGAACAGATG
GAACAAAGAACCTAAATGTAATTGGTTCAGGGGTTCGCAATATTACGTTTGTGCCTAGTGAAGATAATCCATCTCCGCAA
AACAGTTGTGGAAAATTAAAGCTATCTGGTAATGAGCAAGGAACAGGGCAGTGGCAATGCACAAGCTATTTGATCCCTGC
ACGCTGGTATGAGCGGTATCGCTAA

Domains

Predicted by InterproScan.

Neisseria PilC beta-propeller domain (T4P_PilY1)

(823-1083)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilY1 Acinetobacter baumannii D1279779

76.492

78.121

0.598

Multiple sequence alignment