Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilE   Type   Machinery gene
Locus tag   ABLB99_RS01635 Genome accession   NZ_CP157447
Coordinates   353082..353507 (+) Length   141 a.a.
NCBI ID   WP_023188119.1    Uniprot ID   A0AA36K9E2
Organism   Acinetobacter nosocomialis strain XH1727     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 348082..358507
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABLB99_RS01625 (ABLB99_01625) pilY1 348406..352590 (+) 4185 WP_017392606.1 PilC/PilY family type IV pilus protein Machinery gene
  ABLB99_RS01630 (ABLB99_01630) pilY2 352603..353085 (+) 483 WP_004884685.1 type IV pilin protein Machinery gene
  ABLB99_RS01635 (ABLB99_01635) pilE 353082..353507 (+) 426 WP_023188119.1 type IV pilin protein Machinery gene
  ABLB99_RS01640 (ABLB99_01640) rpsP 353654..353905 (+) 252 WP_000260334.1 30S ribosomal protein S16 -
  ABLB99_RS01645 (ABLB99_01645) rimM 353925..354473 (+) 549 WP_004711694.1 ribosome maturation factor RimM -
  ABLB99_RS01650 (ABLB99_01650) trmD 354520..355275 (+) 756 WP_004884678.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  ABLB99_RS01655 (ABLB99_01655) rplS 355491..355859 (+) 369 WP_002051668.1 50S ribosomal protein L19 -
  ABLB99_RS01660 (ABLB99_01660) - 355911..356852 (-) 942 WP_079377864.1 triacylglycerol lipase -
  ABLB99_RS01665 (ABLB99_01665) - 356967..358001 (-) 1035 WP_002051740.1 lipase secretion chaperone -

Sequence

Protein


Download         Length: 141 a.a.        Molecular weight: 15256.46 Da        Isoelectric Point: 7.7765

>NTDB_id=1006921 ABLB99_RS01635 WP_023188119.1 353082..353507(+) (pilE) [Acinetobacter nosocomialis strain XH1727]
MKNGFTLIEIMVVVAIIAILVAIATPSYLQYVRKGNRTAVQSEMMNIAQTLESQKMVNNRYPSNATIQSIYGSNVSPLQG
KALYTLAFTTLNDSTWVLTATPIANTSQAGDGIICLNDQGQKFWAKGATDCALSASSNWTE

Nucleotide


Download         Length: 426 bp        

>NTDB_id=1006921 ABLB99_RS01635 WP_023188119.1 353082..353507(+) (pilE) [Acinetobacter nosocomialis strain XH1727]
GTGAAGAATGGTTTTACACTGATAGAAATTATGGTTGTGGTAGCAATTATTGCAATTTTGGTAGCGATAGCTACTCCATC
GTATTTACAATATGTTCGTAAAGGGAATCGTACAGCCGTTCAATCTGAAATGATGAATATTGCACAAACTTTAGAGTCTC
AAAAGATGGTGAATAACCGTTATCCCTCAAATGCAACTATACAATCAATTTATGGCTCTAATGTGAGTCCTCTTCAGGGC
AAAGCTTTATATACTTTAGCTTTTACTACTTTAAACGATTCGACATGGGTGCTTACGGCAACACCAATCGCTAATACTTC
ACAAGCGGGTGATGGAATTATTTGCTTAAATGATCAAGGGCAAAAATTTTGGGCAAAAGGTGCTACAGATTGTGCACTAT
CGGCTTCATCAAATTGGACAGAGTAA

Domains

Predicted by InterproScan.

Type IV minor pilin ComP, DNA uptake sequence receptor (ComP_DUS)

(26-115)

Prokaryotic N-terminal methylation motif (N_methyl)

(2-24)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilE Acinetobacter baumannii D1279779

96.454

100

0.965
  comF Acinetobacter baylyi ADP1

52.857

99.291

0.525

Multiple sequence alignment