Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   ABLB96_RS10150 Genome accession   NZ_CP157428
Coordinates   2137508..2138557 (-) Length   349 a.a.
NCBI ID   WP_348897442.1    Uniprot ID   A0AB39K0F3
Organism   Acinetobacter sp. XH1741     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2132508..2143557
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABLB96_RS10115 (ABLB96_10125) - 2132755..2133258 (+) 504 WP_348897436.1 OmpH family outer membrane protein -
  ABLB96_RS10120 (ABLB96_10130) lpxD 2133263..2134333 (+) 1071 WP_348897438.1 UDP-3-O-(3-hydroxymyristoyl)glucosamine N-acyltransferase -
  ABLB96_RS10125 (ABLB96_10135) fabZ 2134340..2134825 (+) 486 WP_000140523.1 3-hydroxyacyl-ACP dehydratase FabZ -
  ABLB96_RS10130 (ABLB96_10140) lpxA 2134822..2135610 (+) 789 WP_309455082.1 acyl-ACP--UDP-N-acetylglucosamine O-acyltransferase -
  ABLB96_RS10135 (ABLB96_10145) - 2135665..2136543 (-) 879 WP_348897439.1 YbgF trimerization domain-containing protein -
  ABLB96_RS10145 (ABLB96_10155) - 2136972..2137454 (-) 483 WP_348897440.1 regulatory protein RecX -
  ABLB96_RS10150 (ABLB96_10160) recA 2137508..2138557 (-) 1050 WP_348897442.1 recombinase RecA Machinery gene
  ABLB96_RS10155 (ABLB96_10165) - 2138704..2139144 (-) 441 WP_348897444.1 S4 domain-containing protein -
  ABLB96_RS10160 (ABLB96_10170) - 2139128..2139814 (-) 687 WP_348897446.1 HAD-IA family hydrolase -
  ABLB96_RS10165 (ABLB96_10175) - 2140385..2140621 (+) 237 WP_348897448.1 hypothetical protein -
  ABLB96_RS10170 (ABLB96_10180) - 2140737..2141030 (+) 294 WP_348897449.1 hypothetical protein -
  ABLB96_RS10175 (ABLB96_10185) - 2141077..2141619 (-) 543 WP_348897450.1 GNAT family N-acetyltransferase -
  ABLB96_RS10180 (ABLB96_10190) gigD 2141664..2142113 (-) 450 WP_002049635.1 Lrp/AsnC family transcriptional regulator GigD -
  ABLB96_RS10185 (ABLB96_10195) kynU 2142261..2143511 (+) 1251 WP_348897452.1 kynureninase -

Sequence

Protein


Download         Length: 349 a.a.        Molecular weight: 37762.20 Da        Isoelectric Point: 4.9278

>NTDB_id=1006775 ABLB96_RS10150 WP_348897442.1 2137508..2138557(-) (recA) [Acinetobacter sp. XH1741]
MDENKSKALQAALSQIEKQFGKNTVMRLGDNTVQAVEAVSTGSLTLDIALGIGGLPKGRIVEIYGPESSGKTTMTLQAIA
QCQKAGGTCAFIDAEHALDPQYARKLGVDIDNLLVSQPDNGEQALEIADMLVRSGAIDLIVVDSVAALTPKAEIEGEMGD
SHMGLQARLMSQALRKITGNAKRSNCMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGQVKEGDEIVGSE
TRVKVVKNKMAPPFKEAIFQILYGKGTNQLGELVDLAVQQDIVQKAGAWYSYQGNKIGQGKNNVIRHFEENPQMAGEIEK
VIREQLLTTGTNGAVQIEDEEEPDLLLES

Nucleotide


Download         Length: 1050 bp        

>NTDB_id=1006775 ABLB96_RS10150 WP_348897442.1 2137508..2138557(-) (recA) [Acinetobacter sp. XH1741]
ATGGATGAGAATAAAAGCAAAGCATTACAAGCCGCTTTGAGTCAAATTGAAAAACAATTTGGCAAAAATACGGTTATGCG
TCTCGGCGATAACACTGTTCAAGCAGTTGAAGCCGTATCTACAGGTTCTTTAACTTTAGATATCGCATTGGGGATTGGTG
GTTTACCAAAAGGTCGTATTGTTGAGATTTATGGCCCTGAATCTTCTGGTAAAACTACAATGACATTACAAGCAATTGCG
CAATGTCAAAAAGCTGGTGGTACTTGTGCATTTATCGATGCTGAGCACGCATTAGACCCTCAATATGCACGTAAGCTTGG
TGTAGACATTGATAACTTACTTGTATCGCAGCCTGACAATGGAGAACAAGCACTCGAAATTGCGGACATGCTAGTTCGCT
CTGGTGCAATTGACTTAATCGTTGTCGACTCTGTAGCTGCACTTACACCTAAGGCAGAAATTGAAGGCGAAATGGGCGAC
TCTCACATGGGTCTACAAGCACGTCTTATGAGTCAGGCCCTACGTAAAATTACAGGTAACGCTAAACGCTCAAACTGTAT
GGTTATCTTCATTAACCAGATCCGTATGAAGATTGGTGTTATGTTTGGTAGCCCTGAAACTACGACTGGTGGTAATGCAT
TGAAGTTCTACGCTTCGGTACGTTTAGATATTCGTCGTATTGGCCAAGTAAAAGAAGGCGACGAGATTGTTGGTTCTGAA
ACTCGAGTTAAAGTAGTGAAAAACAAAATGGCTCCTCCTTTCAAAGAAGCTATTTTCCAAATCCTATATGGTAAAGGTAC
AAACCAGCTAGGTGAACTTGTAGATTTGGCTGTACAACAAGATATCGTGCAAAAAGCAGGTGCTTGGTATTCGTATCAAG
GCAATAAAATTGGTCAAGGTAAAAATAATGTTATCCGCCACTTTGAAGAAAATCCTCAAATGGCAGGAGAGATTGAAAAA
GTTATCCGTGAACAACTGCTAACAACCGGCACTAATGGTGCAGTTCAAATTGAAGATGAAGAAGAACCAGATCTTTTATT
AGAATCTTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Acinetobacter baumannii D1279779

97.421

100

0.974
  recA Acinetobacter baylyi ADP1

93.372

99.427

0.928
  recA Pseudomonas stutzeri DSM 10701

75.904

95.129

0.722
  recA Vibrio cholerae strain A1552

74.312

93.696

0.696
  recA Vibrio cholerae O1 biovar El Tor strain E7946

74.312

93.696

0.696
  recA Ralstonia pseudosolanacearum GMI1000

70.517

94.269

0.665
  recA Glaesserella parasuis strain SC1401

71.605

92.837

0.665
  recA Neisseria gonorrhoeae MS11

66.092

99.713

0.659
  recA Neisseria gonorrhoeae strain FA1090

66.092

99.713

0.659
  recA Neisseria gonorrhoeae MS11

66.092

99.713

0.659
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

61.808

98.281

0.607
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

63.746

94.842

0.605
  recA Helicobacter pylori strain NCTC11637

63.609

93.696

0.596
  recA Helicobacter pylori 26695

63.303

93.696

0.593
  recA Streptococcus pyogenes NZ131

58.074

100

0.587
  recA Streptococcus mitis SK321

59.824

97.708

0.585
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

64.353

90.831

0.585
  recA Streptococcus mutans UA159

61.585

93.983

0.579
  recA Streptococcus pneumoniae R6

61.35

93.41

0.573
  recA Streptococcus pneumoniae Rx1

61.35

93.41

0.573
  recA Streptococcus pneumoniae D39

61.35

93.41

0.573
  recA Streptococcus pneumoniae TIGR4

61.35

93.41

0.573
  recA Streptococcus mitis NCTC 12261

61.043

93.41

0.57
  recA Bacillus subtilis subsp. subtilis str. 168

61.491

92.264

0.567
  recA Latilactobacillus sakei subsp. sakei 23K

58.879

91.977

0.542
  recA Lactococcus lactis subsp. cremoris KW2

58.514

92.55

0.542

Multiple sequence alignment