Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   AABA75_RS00850 Genome accession   NZ_AP027272
Coordinates   186405..187916 (+) Length   503 a.a.
NCBI ID   WP_338290441.1    Uniprot ID   A0AA48HG04
Organism   Planctobacterium marinum strain Dej080120_11     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 181405..192916
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AABA75_RS00830 (MACH26_01600) ilvM 181988..182239 (-) 252 WP_338290437.1 acetolactate synthase 2 small subunit -
  AABA75_RS00835 (MACH26_01610) ilvG 182223..183917 (-) 1695 WP_338290438.1 acetolactate synthase 2 catalytic subunit -
  AABA75_RS00840 (MACH26_01620) - 184251..184892 (+) 642 WP_338290439.1 trimeric intracellular cation channel family protein -
  AABA75_RS00845 - 185174..185707 (-) 534 WP_338290440.1 hypothetical protein -
  AABA75_RS00850 (MACH26_01650) comM 186405..187916 (+) 1512 WP_338290441.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  AABA75_RS00855 (MACH26_01660) ilvY 187926..188783 (-) 858 WP_338290442.1 HTH-type transcriptional activator IlvY -
  AABA75_RS00860 (MACH26_01670) ilvC 188896..190380 (+) 1485 WP_338290444.1 ketol-acid reductoisomerase -
  AABA75_RS00865 (MACH26_01680) - 190516..190827 (+) 312 WP_338290445.1 antibiotic biosynthesis monooxygenase -
  AABA75_RS00870 (MACH26_01690) - 190958..191815 (+) 858 WP_338290447.1 hypothetical protein -
  AABA75_RS00875 (MACH26_01700) - 191865..192347 (-) 483 WP_338290449.1 GNAT family N-acetyltransferase -

Sequence

Protein


Download         Length: 503 a.a.        Molecular weight: 54951.07 Da        Isoelectric Point: 8.6084

>NTDB_id=100499 AABA75_RS00850 WP_338290441.1 186405..187916(+) (comM) [Planctobacterium marinum strain Dej080120_11]
MALAVVKTRAVVGIEAPLVTVEVHLSNGLPGFNIVGLPEASVREARDRVRSALINSQFEFPAKKITVNLAPADLPKEGGR
FDLAIAIGIVAASGLQPEIHCDDYEFVGELALSGELRPVSGILPVSVAARDAQRKLIIPQENGKEAMLVSDAQVFCGRNF
YEVYQHLSGQSPLAQVQACAKPEYTEAPQDMAEVIGQEQAKRALTIAAAGRHNIVFCGPPGTGKTMLASRLAGLLPAMSE
KESLQTATVNSVANLPFNRETWRQRPFRAPHHTSSAVSLVGGGSKPMPGEISLAHNGVLFLDELTEFPRKVLDVLREPLE
AGKITISRAAQKAVFPAKFQLIAALNPSPSGDIHDGRHTPEQIIKYLNRVSGPFLDRIDLQVDVPRMSRAEFSQARMHQS
QTTAQIKAQVEQARARQQHRAGKLNAELSTTEVKQTCGLKEADQHFLDMAIEKLQLSIRTYQRILKVARTIADLSESEQI
QRQHLAEALGYRALDRIIANLLR

Nucleotide


Download         Length: 1512 bp        

>NTDB_id=100499 AABA75_RS00850 WP_338290441.1 186405..187916(+) (comM) [Planctobacterium marinum strain Dej080120_11]
GTGGCATTGGCAGTTGTAAAAACCCGCGCGGTGGTGGGCATTGAAGCCCCTTTGGTAACGGTCGAAGTGCATTTATCCAA
TGGTTTGCCGGGGTTTAATATCGTTGGCTTACCCGAAGCTTCTGTGAGAGAAGCCAGAGACAGGGTGCGCAGTGCCTTAA
TCAACTCGCAATTTGAATTTCCCGCCAAAAAAATCACGGTTAATCTCGCGCCAGCGGATTTGCCTAAAGAGGGCGGCAGA
TTTGATCTAGCCATTGCCATTGGCATTGTTGCCGCTTCAGGATTACAGCCGGAAATTCACTGTGACGACTATGAGTTTGT
AGGAGAACTGGCGTTATCCGGTGAATTGCGGCCGGTGAGTGGTATCTTGCCAGTGTCGGTGGCGGCTCGCGACGCTCAGC
GTAAGCTCATCATTCCGCAGGAAAATGGCAAAGAAGCCATGTTGGTTTCCGATGCACAGGTATTTTGTGGGCGTAATTTT
TACGAAGTGTACCAGCATTTAAGTGGTCAGAGCCCGTTAGCGCAAGTTCAGGCTTGTGCAAAGCCGGAGTACACCGAAGC
ACCGCAGGATATGGCGGAGGTAATAGGTCAGGAGCAAGCTAAGCGAGCACTTACTATTGCTGCGGCAGGCCGGCATAATA
TTGTATTTTGCGGTCCACCAGGAACCGGGAAAACCATGCTGGCTTCCAGGTTGGCAGGTTTACTACCTGCAATGTCAGAA
AAGGAATCGCTACAAACGGCCACAGTGAATTCCGTGGCCAACTTGCCGTTTAATCGGGAAACCTGGCGACAACGGCCTTT
TCGGGCACCGCACCATACCTCTTCGGCGGTGTCTTTGGTGGGGGGAGGTAGTAAACCCATGCCTGGTGAGATCAGCCTGG
CCCATAATGGCGTATTGTTTCTGGATGAGTTAACGGAATTTCCCCGGAAAGTACTGGATGTACTACGAGAACCTTTGGAA
GCTGGTAAAATAACCATTTCCAGAGCGGCCCAAAAAGCGGTATTCCCGGCAAAATTTCAGCTGATTGCGGCGTTAAATCC
AAGCCCGTCAGGAGATATTCATGATGGCAGGCACACTCCCGAGCAAATCATAAAATACCTTAACCGGGTATCGGGACCGT
TTCTGGATCGCATTGATTTGCAGGTGGATGTGCCACGCATGTCCAGAGCTGAATTCAGTCAGGCAAGGATGCATCAAAGC
CAAACAACGGCTCAGATAAAAGCTCAGGTAGAGCAGGCCAGAGCACGGCAACAACATCGGGCAGGCAAGTTAAACGCCGA
GCTATCCACTACTGAAGTGAAACAAACCTGTGGATTAAAGGAGGCGGATCAACACTTTTTAGACATGGCCATAGAAAAGT
TGCAGCTGTCCATCCGAACTTATCAACGTATTTTGAAAGTGGCGCGCACCATTGCTGACCTCTCAGAGTCTGAGCAAATA
CAACGACAACACTTGGCTGAGGCTTTGGGTTATCGTGCATTGGACCGCATTATCGCCAATTTATTGCGTTAG

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-390)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(401-492)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

56.496

100

0.571
  comM Vibrio campbellii strain DS40M4

55.666

100

0.557
  comM Glaesserella parasuis strain SC1401

54.832

100

0.553
  comM Vibrio cholerae strain A1552

54.96

100

0.551
  comM Legionella pneumophila str. Paris

49.9

99.205

0.495
  comM Legionella pneumophila strain ERS1305867

49.9

99.205

0.495
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

45.187

100

0.457

Multiple sequence alignment