Detailed information
Bioinformatically predicted
Overview
| Name | ssbA | Type | Machinery gene |
| Locus tag | UXQ87_RS09800 | Genome accession | NZ_CP156986 |
| Coordinates | 1991942..1992412 (-) | Length | 156 a.a. |
| NCBI ID | WP_000934760.1 | Uniprot ID | A0AAN2D761 |
| Organism | Staphylococcus aureus strain BSN68 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 1962592..2009035 | 1991942..1992412 | within | 0 |
Gene organization within MGE regions
Location: 1962592..2009035
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| UXQ87_RS09585 (UXQ87_09585) | scn | 1962592..1962942 (-) | 351 | WP_000702262.1 | complement inhibitor SCIN-A | - |
| UXQ87_RS09590 (UXQ87_09590) | - | 1963624..1964073 (+) | 450 | WP_000727645.1 | chemotaxis-inhibiting protein CHIPS | - |
| UXQ87_RS09595 (UXQ87_09595) | - | 1964166..1964500 (-) | 335 | Protein_1850 | SH3 domain-containing protein | - |
| UXQ87_RS09600 (UXQ87_09600) | sak | 1965151..1965642 (-) | 492 | WP_000920041.1 | staphylokinase | - |
| UXQ87_RS09605 (UXQ87_09605) | - | 1965833..1966588 (-) | 756 | WP_000861038.1 | CHAP domain-containing protein | - |
| UXQ87_RS09610 (UXQ87_09610) | - | 1966600..1966854 (-) | 255 | WP_000611512.1 | phage holin | - |
| UXQ87_RS09615 (UXQ87_09615) | - | 1966906..1967013 (+) | 108 | WP_031762631.1 | hypothetical protein | - |
| UXQ87_RS09620 (UXQ87_09620) | pepG1 | 1967066..1967200 (-) | 135 | WP_000880503.1 | type I toxin-antitoxin system toxin PepG1 | - |
| UXQ87_RS09625 (UXQ87_09625) | - | 1967385..1967759 (-) | 375 | WP_000340977.1 | hypothetical protein | - |
| UXQ87_RS09630 (UXQ87_09630) | - | 1967815..1968102 (-) | 288 | WP_001262620.1 | hypothetical protein | - |
| UXQ87_RS09635 (UXQ87_09635) | - | 1968148..1968300 (-) | 153 | WP_001000058.1 | hypothetical protein | - |
| UXQ87_RS09640 (UXQ87_09640) | - | 1968293..1972075 (-) | 3783 | WP_336222525.1 | phage tail spike protein | - |
| UXQ87_RS09645 (UXQ87_09645) | - | 1972091..1973575 (-) | 1485 | WP_000567408.1 | phage tail domain-containing protein | - |
| UXQ87_RS09650 (UXQ87_09650) | - | 1973572..1978101 (-) | 4530 | WP_001792924.1 | phage tail tape measure protein | - |
| UXQ87_RS09655 (UXQ87_09655) | - | 1978158..1978295 (-) | 138 | WP_001549167.1 | hypothetical protein | - |
| UXQ87_RS09660 (UXQ87_09660) | - | 1978346..1978696 (-) | 351 | WP_001096355.1 | hypothetical protein | - |
| UXQ87_RS09665 (UXQ87_09665) | - | 1978746..1978976 (-) | 231 | Protein_1864 | Ig-like domain-containing protein | - |
| UXQ87_RS09670 (UXQ87_09670) | - | 1979012..1979656 (-) | 645 | WP_336222526.1 | major tail protein | - |
| UXQ87_RS09675 (UXQ87_09675) | - | 1979657..1980064 (-) | 408 | WP_000565498.1 | hypothetical protein | - |
| UXQ87_RS09680 (UXQ87_09680) | - | 1980061..1980465 (-) | 405 | WP_000114226.1 | HK97 gp10 family phage protein | - |
| UXQ87_RS09685 (UXQ87_09685) | - | 1980462..1980824 (-) | 363 | WP_000755148.1 | head-tail adaptor protein | - |
| UXQ87_RS09690 (UXQ87_09690) | - | 1980808..1981092 (-) | 285 | WP_000150936.1 | phage head-tail adapter protein | - |
| UXQ87_RS09695 (UXQ87_09695) | - | 1981082..1981366 (-) | 285 | WP_000238236.1 | hypothetical protein | - |
| UXQ87_RS09700 (UXQ87_09700) | - | 1981386..1982531 (-) | 1146 | WP_000154559.1 | phage major capsid protein | - |
| UXQ87_RS09705 (UXQ87_09705) | - | 1982555..1983292 (-) | 738 | WP_000642728.1 | head maturation protease, ClpP-related | - |
| UXQ87_RS09710 (UXQ87_09710) | - | 1983276..1984463 (-) | 1188 | WP_000025274.1 | phage portal protein | - |
| UXQ87_RS09715 (UXQ87_09715) | - | 1984479..1986140 (-) | 1662 | WP_000625088.1 | terminase large subunit | - |
| UXQ87_RS09720 (UXQ87_09720) | - | 1986137..1986481 (-) | 345 | WP_000402904.1 | hypothetical protein | - |
| UXQ87_RS09725 (UXQ87_09725) | - | 1986610..1986909 (-) | 300 | WP_000988336.1 | HNH endonuclease | - |
| UXQ87_RS09730 (UXQ87_09730) | - | 1987141..1987557 (-) | 417 | WP_000590122.1 | hypothetical protein | - |
| UXQ87_RS09735 (UXQ87_09735) | - | 1987585..1987785 (-) | 201 | WP_000265043.1 | DUF1514 family protein | - |
| UXQ87_RS09740 (UXQ87_09740) | - | 1987785..1987934 (-) | 150 | WP_000595265.1 | transcriptional activator RinB | - |
| UXQ87_RS09745 (UXQ87_09745) | - | 1987931..1988317 (-) | 387 | WP_000592207.1 | hypothetical protein | - |
| UXQ87_RS09750 (UXQ87_09750) | - | 1988314..1988520 (-) | 207 | WP_000195803.1 | DUF1381 domain-containing protein | - |
| UXQ87_RS09755 (UXQ87_09755) | - | 1988517..1988762 (-) | 246 | WP_001282074.1 | hypothetical protein | - |
| UXQ87_RS09760 (UXQ87_09760) | - | 1988799..1989335 (-) | 537 | WP_001066447.1 | dUTP diphosphatase | - |
| UXQ87_RS09765 (UXQ87_09765) | - | 1989328..1989498 (-) | 171 | WP_000714403.1 | hypothetical protein | - |
| UXQ87_RS09770 (UXQ87_09770) | - | 1989485..1989739 (-) | 255 | WP_001065097.1 | DUF1024 family protein | - |
| UXQ87_RS09775 (UXQ87_09775) | - | 1989754..1989996 (-) | 243 | WP_000131370.1 | SAV1978 family virulence-associated passenger protein | - |
| UXQ87_RS09780 (UXQ87_09780) | - | 1990000..1990368 (-) | 369 | WP_000101288.1 | SA1788 family PVL leukocidin-associated protein | - |
| UXQ87_RS09785 (UXQ87_09785) | - | 1990381..1990785 (-) | 405 | WP_000401974.1 | RusA family crossover junction endodeoxyribonuclease | - |
| UXQ87_RS09790 (UXQ87_09790) | - | 1990794..1991012 (-) | 219 | WP_000338530.1 | hypothetical protein | - |
| UXQ87_RS09795 (UXQ87_09795) | - | 1991019..1991912 (-) | 894 | WP_000148321.1 | DnaD domain-containing protein | - |
| UXQ87_RS09800 (UXQ87_09800) | ssbA | 1991942..1992412 (-) | 471 | WP_000934760.1 | single-stranded DNA-binding protein | Machinery gene |
| UXQ87_RS09805 (UXQ87_09805) | - | 1992413..1993030 (-) | 618 | WP_071665632.1 | MBL fold metallo-hydrolase | - |
| UXQ87_RS09810 (UXQ87_09810) | - | 1993111..1994031 (-) | 921 | WP_000138475.1 | recombinase RecT | - |
| UXQ87_RS09815 (UXQ87_09815) | - | 1994033..1995976 (-) | 1944 | WP_025173834.1 | AAA family ATPase | - |
| UXQ87_RS09820 (UXQ87_09820) | - | 1995985..1996248 (-) | 264 | WP_001205732.1 | hypothetical protein | - |
| UXQ87_RS09825 (UXQ87_09825) | - | 1996257..1996517 (-) | 261 | WP_000291504.1 | DUF1108 family protein | - |
| UXQ87_RS09830 (UXQ87_09830) | - | 1996522..1996824 (-) | 303 | WP_000165364.1 | DUF2482 family protein | - |
| UXQ87_RS09835 (UXQ87_09835) | - | 1996917..1997078 (-) | 162 | WP_000066011.1 | DUF1270 domain-containing protein | - |
| UXQ87_RS09840 (UXQ87_09840) | - | 1997075..1997395 (-) | 321 | WP_001120936.1 | DUF771 domain-containing protein | - |
| UXQ87_RS09845 (UXQ87_09845) | - | 1997545..1997643 (-) | 99 | Protein_1900 | hypothetical protein | - |
| UXQ87_RS09850 (UXQ87_09850) | - | 1997668..1998069 (-) | 402 | Protein_1901 | phage antirepressor KilAC domain-containing protein | - |
| UXQ87_RS09855 (UXQ87_09855) | sph | 1998067..1998879 (+) | 813 | Protein_1902 | sphingomyelin phosphodiesterase | - |
| UXQ87_RS09860 (UXQ87_09860) | lukG | 1999117..2000133 (-) | 1017 | WP_000595326.1 | bi-component leukocidin LukGH subunit G | - |
| UXQ87_RS09865 (UXQ87_09865) | lukH | 2000155..2001207 (-) | 1053 | WP_000791419.1 | bi-component leukocidin LukGH subunit H | - |
| UXQ87_RS09870 (UXQ87_09870) | - | 2001643..2002866 (+) | 1224 | WP_000206621.1 | ArgE/DapE family deacylase | - |
| UXQ87_RS09875 (UXQ87_09875) | - | 2003238..2004084 (-) | 847 | Protein_1906 | class I SAM-dependent methyltransferase | - |
| UXQ87_RS09880 (UXQ87_09880) | - | 2004146..2005057 (-) | 912 | WP_000825510.1 | iron-hydroxamate ABC transporter substrate-binding protein | - |
| UXQ87_RS09885 (UXQ87_09885) | - | 2005218..2006525 (+) | 1308 | WP_001045085.1 | TrkH family potassium uptake protein | - |
| UXQ87_RS09890 (UXQ87_09890) | groL | 2007059..2008675 (-) | 1617 | WP_000240642.1 | chaperonin GroEL | - |
| UXQ87_RS09895 (UXQ87_09895) | groES | 2008751..2009035 (-) | 285 | WP_000917289.1 | co-chaperone GroES | - |
Sequence
Protein
Download Length: 156 a.a. Molecular weight: 17641.52 Da Isoelectric Point: 5.2672
>NTDB_id=1003561 UXQ87_RS09800 WP_000934760.1 1991942..1992412(-) (ssbA) [Staphylococcus aureus strain BSN68]
MLNRTILVGRLTRDPELRTTQSGVNVASFTLAVNRTFTNAQGEREADFINIIVFKKQAENVNKYLSKGSLAGVDGRLQTR
NYENKEGQRVYVTEVIADSIQFLEPKNSNDTQQDLYQQQVQQTRGQSQYSNNKPVKDNPFANANGPIELNDDDLPF
MLNRTILVGRLTRDPELRTTQSGVNVASFTLAVNRTFTNAQGEREADFINIIVFKKQAENVNKYLSKGSLAGVDGRLQTR
NYENKEGQRVYVTEVIADSIQFLEPKNSNDTQQDLYQQQVQQTRGQSQYSNNKPVKDNPFANANGPIELNDDDLPF
Nucleotide
Download Length: 471 bp
>NTDB_id=1003561 UXQ87_RS09800 WP_000934760.1 1991942..1992412(-) (ssbA) [Staphylococcus aureus strain BSN68]
ATGCTAAACAGAACAATATTAGTTGGTCGTTTAACTAGAGACCCAGAATTAAGAACCACTCAAAGTGGTGTAAATGTAGC
ATCATTCACATTAGCAGTTAACCGTACATTTACAAATGCACAAGGCGAGCGCGAGGCAGACTTTATTAATATCATCGTAT
TTAAAAAACAAGCAGAGAACGTTAATAAATACCTATCTAAAGGATCGTTGGCGGGCGTAGATGGTAGGTTACAAACGCGG
AACTATGAAAATAAGGAAGGTCAACGTGTATACGTTACGGAAGTTATTGCTGATAGTATTCAATTTTTAGAACCGAAAAA
CTCAAATGACACTCAACAAGATTTATATCAACAACAAGTACAACAAACACGTGGACAATCGCAATATTCAAATAACAAAC
CAGTAAAAGATAATCCGTTTGCGAATGCAAATGGTCCGATTGAACTAAATGATGATGATTTACCATTCTAA
ATGCTAAACAGAACAATATTAGTTGGTCGTTTAACTAGAGACCCAGAATTAAGAACCACTCAAAGTGGTGTAAATGTAGC
ATCATTCACATTAGCAGTTAACCGTACATTTACAAATGCACAAGGCGAGCGCGAGGCAGACTTTATTAATATCATCGTAT
TTAAAAAACAAGCAGAGAACGTTAATAAATACCTATCTAAAGGATCGTTGGCGGGCGTAGATGGTAGGTTACAAACGCGG
AACTATGAAAATAAGGAAGGTCAACGTGTATACGTTACGGAAGTTATTGCTGATAGTATTCAATTTTTAGAACCGAAAAA
CTCAAATGACACTCAACAAGATTTATATCAACAACAAGTACAACAAACACGTGGACAATCGCAATATTCAAATAACAAAC
CAGTAAAAGATAATCCGTTTGCGAATGCAAATGGTCCGATTGAACTAAATGATGATGATTTACCATTCTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
55.932 |
100 |
0.635 |
| ssb | Latilactobacillus sakei subsp. sakei 23K |
50.588 |
100 |
0.551 |
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
59.434 |
67.949 |
0.404 |
| ssb | Glaesserella parasuis strain SC1401 |
32.768 |
100 |
0.372 |
| ssb | Neisseria meningitidis MC58 |
32.948 |
100 |
0.365 |
| ssb | Neisseria gonorrhoeae MS11 |
32.948 |
100 |
0.365 |