Detailed information    

insolico Bioinformatically predicted

Overview

Name   coiA   Type   Machinery gene
Locus tag   AACH30_RS02295 Genome accession   NZ_AP027243
Coordinates   470980..471984 (+) Length   334 a.a.
NCBI ID   WP_265150332.1    Uniprot ID   A0AA43PE06
Organism   Lactococcus garvieae strain L21-68     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 465980..476984
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AACH30_RS02275 (LG21E68_04410) - 466369..467073 (+) 705 WP_004258993.1 Bax inhibitor-1/YccA family protein -
  AACH30_RS02280 (LG21E68_04420) - 467126..467950 (-) 825 WP_014024379.1 Cof-type HAD-IIB family hydrolase -
  AACH30_RS02285 (LG21E68_04430) - 468307..469728 (+) 1422 WP_014024380.1 NCS2 family permease -
  AACH30_RS02290 (LG21E68_04440) - 469805..470905 (+) 1101 WP_281162249.1 YdcF family protein -
  AACH30_RS02295 (LG21E68_04450) coiA 470980..471984 (+) 1005 WP_265150332.1 competence protein CoiA family protein Machinery gene
  AACH30_RS02300 (LG21E68_04460) pepF 471968..473773 (+) 1806 WP_265150334.1 oligoendopeptidase F Regulator
  AACH30_RS02305 (LG21E68_04470) - 473773..474456 (+) 684 WP_004258974.1 O-methyltransferase -
  AACH30_RS02310 (LG21E68_04480) - 474554..475462 (+) 909 WP_265150336.1 peptidyl-prolyl cis-trans isomerase -

Sequence

Protein


Download         Length: 334 a.a.        Molecular weight: 39861.65 Da        Isoelectric Point: 7.7366

>NTDB_id=100309 AACH30_RS02295 WP_265150332.1 470980..471984(+) (coiA) [Lactococcus garvieae strain L21-68]
MLIALDKDGKTINLLDSTSINGPFYCPACKTSLRLKKGKIKIPHFAHVSLQNCDSWSENESAQHLGLKLSLYQWFKEKEK
VELEKYVPEIKQTADLLVNDKLAIEIQCSPLSLQRLEERTVSYKEMGYYVLWLQGRDLWLKNTLSSLQKNLLYYSAERGF
YFWELDWNRKKLRLKSLIYQDLKGRPIYLTEEFDFFQESLLDLLRQPFRKGKTLSLDVPKQEELQLFVQKQLYYQVPKWL
KVQEKYYEQGRNLLDLNWKKSYWSPPGLNLLTFDFADDTRESFFQVDISLEEYYHSFYESFQLQEHETLHTPSFYAIIKD
KNKVENGEWNGKKT

Nucleotide


Download         Length: 1005 bp        

>NTDB_id=100309 AACH30_RS02295 WP_265150332.1 470980..471984(+) (coiA) [Lactococcus garvieae strain L21-68]
ATGTTAATAGCTTTGGATAAAGACGGAAAAACAATTAATCTTCTTGACAGCACTTCAATTAATGGCCCTTTTTATTGCCC
GGCCTGTAAGACGTCCCTTCGTTTAAAAAAAGGGAAGATAAAAATTCCTCACTTTGCCCATGTATCCTTACAAAATTGTG
ACTCTTGGAGTGAAAATGAATCTGCACAACACTTGGGCTTAAAACTCAGCTTATATCAGTGGTTTAAGGAAAAAGAGAAA
GTAGAGCTGGAAAAGTACGTGCCAGAGATTAAGCAAACGGCTGATTTGTTAGTGAATGATAAACTTGCTATTGAAATACA
GTGCTCACCCCTCTCTTTGCAACGCTTAGAAGAGAGAACGGTCAGTTACAAAGAAATGGGGTATTATGTACTTTGGCTTC
AAGGGAGGGACTTGTGGCTTAAAAATACGCTATCTTCTTTGCAGAAAAATTTGCTTTATTATTCAGCAGAGAGAGGTTTT
TATTTTTGGGAATTGGACTGGAACAGAAAGAAACTACGTTTGAAATCATTGATTTATCAAGATTTGAAAGGACGACCGAT
TTATCTAACGGAAGAGTTTGACTTCTTTCAAGAAAGTCTCTTAGACCTCTTACGACAGCCCTTTCGAAAAGGAAAAACTC
TGAGTTTAGATGTGCCAAAGCAAGAAGAGTTACAGTTGTTTGTTCAGAAACAATTATATTATCAAGTGCCAAAATGGCTT
AAAGTGCAAGAAAAATATTATGAACAAGGAAGAAATTTGCTGGACCTTAACTGGAAGAAGAGTTACTGGAGTCCTCCGGG
CTTGAACTTGTTGACCTTTGACTTTGCCGATGATACGCGAGAAAGCTTTTTTCAAGTAGACATTTCCTTGGAAGAATATT
ACCACAGCTTCTACGAAAGTTTTCAGTTACAAGAACATGAAACACTGCATACACCAAGCTTCTATGCTATAATTAAAGAT
AAAAATAAAGTGGAAAACGGAGAATGGAATGGCAAAAAAACGTGA

Domains

Predicted by InterproScan.

Competence protein CoiA-like family (CoiA_nuc)

(1-254)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  coiA Lactococcus lactis subsp. cremoris KW2

51.84

97.605

0.506
  coiA Streptococcus pneumoniae Rx1

41.463

98.204

0.407
  coiA Streptococcus pneumoniae D39

41.463

98.204

0.407
  coiA Streptococcus pneumoniae R6

41.463

98.204

0.407
  coiA Streptococcus pneumoniae TIGR4

41.159

98.204

0.404
  coiA Streptococcus mitis NCTC 12261

40.854

98.204

0.401

Multiple sequence alignment