Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   AAGD24_RS14045 Genome accession   NZ_CP156894
Coordinates   3099452..3100672 (+) Length   406 a.a.
NCBI ID   WP_126812063.1    Uniprot ID   -
Organism   Marinobacter sp. M5B strain M5B10.3.1     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3094452..3105672
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAGD24_RS14025 - 3094703..3095146 (-) 444 WP_379865443.1 pilin -
  AAGD24_RS14030 - 3095206..3096723 (-) 1518 WP_379865445.1 O-antigen ligase family protein -
  AAGD24_RS14035 - 3096846..3097334 (-) 489 WP_379867355.1 pilin -
  AAGD24_RS14040 pilB 3097734..3099449 (+) 1716 WP_085679891.1 type IV-A pilus assembly ATPase PilB Machinery gene
  AAGD24_RS14045 pilC 3099452..3100672 (+) 1221 WP_126812063.1 type II secretion system F family protein Machinery gene
  AAGD24_RS14050 pilD 3100758..3101633 (+) 876 WP_379865447.1 prepilin peptidase Machinery gene
  AAGD24_RS14055 coaE 3101634..3102236 (+) 603 WP_379865449.1 dephospho-CoA kinase -
  AAGD24_RS14060 tsaA 3102242..3102988 (+) 747 WP_036209925.1 tRNA (N6-threonylcarbamoyladenosine(37)-N6)-methyltransferase TrmO -
  AAGD24_RS14065 - 3103021..3105381 (+) 2361 WP_227662347.1 response regulator -
  AAGD24_RS14070 yacG 3105402..3105590 (+) 189 WP_036209919.1 DNA gyrase inhibitor YacG -

Sequence

Protein


Download         Length: 406 a.a.        Molecular weight: 44381.27 Da        Isoelectric Point: 9.6081

>NTDB_id=1003084 AAGD24_RS14045 WP_126812063.1 3099452..3100672(+) (pilC) [Marinobacter sp. M5B strain M5B10.3.1]
MAEKAEKLQAFVWEGKDRKGNKTKGEVSGTNLALVKAQLRKQGIIPDKVKKKPKPLFGGSKKITPFDIAMLTRQLATMMK
AGVPLVQSFDIVADGLENRGLQELVTNIRNDISSGTSFAGALKKYPRHFDDLYCNLVDSGEKAGALESMLDRIATYLEKT
EILKKKVKKAMTYPAAIVVVAIIVTAILLVKVVPQFESLFKGFGADLPVFTQMVVRLSEWLQTWWFVVLLGIVGTIFLFK
EAIRRSQKFSDLVDKYVLKLPVVGEILDKSAVAKFGRVLSTTFAAGVPLVDALDSVAGATGNAVYRDAIQRIKNDVSSGT
QLQATMRQQDVFPVMAVQLTAIGEESGNLDEMLEKVAVHYEAVVDDMVDNLTALLEPIIMAVLGVLVGGLIIAMYLPIFQ
MGQVVG

Nucleotide


Download         Length: 1221 bp        

>NTDB_id=1003084 AAGD24_RS14045 WP_126812063.1 3099452..3100672(+) (pilC) [Marinobacter sp. M5B strain M5B10.3.1]
ATGGCAGAGAAAGCAGAGAAACTTCAGGCGTTCGTCTGGGAAGGCAAAGACCGCAAGGGCAACAAAACCAAGGGCGAGGT
GTCTGGCACCAACCTGGCTTTGGTGAAGGCCCAGTTGCGTAAGCAGGGCATTATTCCAGACAAGGTGAAAAAGAAACCAA
AACCCCTGTTTGGCGGCAGCAAAAAGATCACGCCTTTCGACATCGCCATGCTTACCCGCCAGCTCGCCACCATGATGAAG
GCTGGCGTGCCACTGGTTCAGAGTTTCGATATTGTGGCTGACGGCCTTGAGAACAGGGGCCTTCAGGAGTTGGTTACCAA
CATCCGTAACGATATTTCTTCGGGTACGAGCTTTGCAGGCGCACTGAAAAAGTACCCCAGGCACTTTGATGATCTGTACT
GCAACCTCGTGGACTCTGGCGAAAAGGCGGGTGCTCTGGAGAGCATGCTGGATCGCATCGCGACCTATCTTGAGAAAACG
GAGATCCTCAAGAAGAAAGTCAAAAAAGCCATGACCTACCCAGCCGCTATCGTCGTCGTTGCTATCATTGTGACGGCCAT
CCTGCTGGTTAAAGTGGTACCCCAGTTCGAAAGCCTGTTTAAGGGCTTTGGTGCGGACCTGCCCGTATTTACACAGATGG
TGGTCCGGTTGTCGGAATGGCTTCAGACTTGGTGGTTTGTGGTTTTACTCGGCATTGTCGGCACTATCTTTCTGTTCAAG
GAAGCTATTCGACGATCTCAGAAATTCTCGGATCTCGTCGATAAATATGTGCTGAAACTGCCCGTTGTGGGCGAAATCCT
GGATAAGTCGGCCGTTGCCAAGTTTGGGCGCGTACTTTCCACGACCTTTGCGGCTGGTGTTCCGCTCGTTGATGCGCTCG
ACTCCGTTGCCGGCGCGACCGGCAACGCCGTTTATCGGGATGCTATCCAGCGAATAAAAAACGATGTTTCGAGCGGTACC
CAATTACAGGCCACCATGCGCCAACAGGATGTGTTCCCGGTTATGGCAGTGCAATTGACTGCCATTGGTGAAGAATCCGG
TAACCTGGATGAAATGCTGGAGAAAGTCGCCGTCCATTACGAAGCGGTGGTGGATGACATGGTCGACAACCTCACAGCCC
TGCTGGAGCCGATCATCATGGCGGTACTGGGCGTACTCGTAGGCGGCTTGATCATCGCTATGTACCTGCCGATCTTCCAG
ATGGGTCAGGTGGTTGGCTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(277-397)

Type II secretion system (T2SS), protein F (T2SSF)

(72-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

66.42

99.754

0.663
  pilC Acinetobacter baumannii D1279779

57.778

99.754

0.576
  pilC Acinetobacter baylyi ADP1

57.635

100

0.576
  pilC Legionella pneumophila strain ERS1305867

52.709

100

0.527
  pilG Neisseria gonorrhoeae MS11

42.222

99.754

0.421
  pilG Neisseria meningitidis 44/76-A

41.872

100

0.419
  pilC Vibrio campbellii strain DS40M4

40.541

100

0.406
  pilC Vibrio cholerae strain A1552

40.5

98.522

0.399

Multiple sequence alignment