Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   CV024_RS11300 Genome accession   NZ_CP156745
Coordinates   2419038..2419334 (-) Length   98 a.a.
NCBI ID   WP_075988717.1    Uniprot ID   -
Organism   Vibrio fluvialis strain QY27     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2414038..2424334
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CV024_RS11275 (CV024_11275) lapB 2414282..2415451 (-) 1170 WP_024374735.1 lipopolysaccharide assembly protein LapB -
  CV024_RS11280 (CV024_11280) - 2415464..2415748 (-) 285 WP_020327818.1 lipopolysaccharide assembly protein LapA domain-containing protein -
  CV024_RS11285 (CV024_11285) ihfB 2415888..2416172 (-) 285 WP_020430001.1 integration host factor subunit beta -
  CV024_RS11290 (CV024_11290) rpsA 2416403..2418073 (-) 1671 WP_020327821.1 30S ribosomal protein S1 -
  CV024_RS11295 (CV024_11295) cmk 2418178..2418858 (-) 681 WP_024374736.1 (d)CMP kinase -
  CV024_RS11300 (CV024_11300) comEA 2419038..2419334 (-) 297 WP_075988717.1 ComEA family DNA-binding protein Machinery gene
  CV024_RS11305 (CV024_11305) ppiD 2419473..2421332 (-) 1860 WP_061056678.1 peptidylprolyl isomerase -
  CV024_RS11310 (CV024_11310) - 2421488..2421760 (-) 273 WP_004726502.1 HU family DNA-binding protein -
  CV024_RS11315 (CV024_11315) lon 2421955..2424306 (-) 2352 WP_020327825.1 endopeptidase La -

Sequence

Protein


Download         Length: 98 a.a.        Molecular weight: 10622.36 Da        Isoelectric Point: 8.6059

>NTDB_id=1002462 CV024_RS11300 WP_075988717.1 2419038..2419334(-) (comEA) [Vibrio fluvialis strain QY27]
MKIHKFWLAILLAVTWPVSHSWAEGNVSATEGVEITVNINTAPAEELATLLKGIGLKKAQAIVDYREANGAFKSKEDLTQ
VKGIGPAIVAQNDKRILL

Nucleotide


Download         Length: 297 bp        

>NTDB_id=1002462 CV024_RS11300 WP_075988717.1 2419038..2419334(-) (comEA) [Vibrio fluvialis strain QY27]
ATGAAAATTCACAAATTTTGGTTGGCGATTCTCCTGGCTGTCACTTGGCCGGTATCTCACAGTTGGGCGGAAGGAAATGT
TTCTGCTACAGAAGGGGTCGAGATAACTGTCAATATCAATACGGCACCAGCGGAAGAGTTGGCGACTTTACTCAAAGGTA
TCGGCCTGAAAAAAGCCCAAGCAATAGTTGACTATCGTGAGGCCAATGGTGCGTTCAAATCTAAAGAAGATCTGACGCAA
GTGAAAGGCATTGGGCCAGCTATCGTTGCTCAGAATGACAAACGTATCTTGTTATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(36-96)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Vibrio cholerae C6706

61.616

100

0.622
  comEA Vibrio cholerae strain A1552

61.616

100

0.622
  comEA Vibrio parahaemolyticus RIMD 2210633

57.447

95.918

0.551
  comEA Vibrio campbellii strain DS40M4

55.208

97.959

0.541
  comEA/comE1 Glaesserella parasuis strain SC1401

53.425

74.49

0.398
  comEA Legionella pneumophila str. Paris

41.489

95.918

0.398
  comEA Legionella pneumophila strain ERS1305867

41.489

95.918

0.398

Multiple sequence alignment