Detailed information    

insolico Bioinformatically predicted

Overview


Name   xerS   Type   Machinery gene
Locus tag   EL139_RS09070 Genome accession   NZ_LR134316
Coordinates   1824761..1825831 (-) Length   356 a.a.
NCBI ID   WP_111716362.1    Uniprot ID   -
Organism   Streptococcus dysgalactiae subsp. equisimilis strain NCTC6181     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context


Location: 1819761..1830831
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL139_RS09045 (NCTC6181_01856) - 1820517..1821515 (+) 999 WP_111716373.1 polyprenyl synthetase family protein -
  EL139_RS09050 (NCTC6181_01857) - 1821606..1822112 (+) 507 WP_111717925.1 FMN-binding protein -
  EL139_RS09055 (NCTC6181_01858) - 1822183..1823235 (+) 1053 WP_111716370.1 FAD:protein FMN transferase -
  EL139_RS09060 (NCTC6181_01859) - 1823225..1824175 (+) 951 WP_111716367.1 1,4-dihydroxy-2-naphthoate polyprenyltransferase -
  EL139_RS09065 (NCTC6181_01860) - 1824244..1824684 (-) 441 WP_111716365.1 NusG domain II-containing protein -
  EL139_RS09070 (NCTC6181_01861) xerS 1824761..1825831 (-) 1071 WP_111716362.1 tyrosine recombinase XerS Machinery gene
  EL139_RS09075 (NCTC6181_01862) - 1826470..1827714 (+) 1245 WP_111716360.1 peptidoglycan bridge formation glycyltransferase FemA/FemB family protein -
  EL139_RS09080 (NCTC6181_01863) - 1827744..1828166 (-) 423 WP_003058336.1 cupin domain-containing protein -
  EL139_RS09085 (NCTC6181_01864) - 1828291..1829361 (-) 1071 WP_111716358.1 HAMP domain-containing sensor histidine kinase -
  EL139_RS09090 (NCTC6181_01865) - 1829345..1830037 (-) 693 WP_111716356.1 response regulator transcription factor -
  EL139_RS09095 (NCTC6181_01866) - 1830116..1830799 (-) 684 WP_111716354.1 ABC transporter ATP-binding protein -

Sequence


Protein


Download         Length: 356 a.a.        Molecular weight: 41415.65 Da        Isoelectric Point: 9.5512

>NTDB_id=1001394 EL139_RS09070 WP_111716362.1 1824761..1825831(-) (xerS) [Streptococcus dysgalactiae subsp. equisimilis strain NCTC6181]
MRRDLLLEKIETYKAIMPWYVLEYYQSKLAVPYSFTTLYEYLKEYKRFFDWLMDADLTDATVIADIDLATLEHLTKKDLE
TFVLYLRERPSLNTYSTKEGLSQTTINRTLSALSSLYKYLTEEVENDQGEPYFYRNVMKKVSTKKKKETLASRAENIKQK
LFLGDETMGFLEYVDKDYELKLSNRAKSSFRKNKERDLAIIALLLASGVRLSEAVNLDLKDVNLNMMVIEVIRKGGKRDS
VNVAGFAKPYLEAYLAIRKNRYKAEKQDLAFFLTEYRGVPNRMDASSIEKMVGKYSQDFKIRVTPHKLRHTLATRLYDAT
KSQVLVSHQLGHASTQVTDLYTHIVNDEQKNALDKL

Nucleotide


Download         Length: 1071 bp        

>NTDB_id=1001394 EL139_RS09070 WP_111716362.1 1824761..1825831(-) (xerS) [Streptococcus dysgalactiae subsp. equisimilis strain NCTC6181]
ATGAGACGTGATTTATTACTCGAAAAAATTGAAACTTATAAAGCTATCATGCCTTGGTATGTGTTAGAATACTATCAGTC
AAAATTGGCTGTCCCATACAGTTTTACAACGCTATATGAGTATTTAAAAGAATACAAACGTTTTTTTGACTGGTTAATGG
ATGCTGACTTAACGGATGCGACTGTCATTGCTGATATCGATTTAGCGACTCTTGAACACCTGACTAAGAAAGATTTAGAG
ACCTTTGTTCTGTACCTAAGAGAACGCCCTTCTCTTAATACTTATTCCACCAAAGAGGGTCTTTCTCAAACAACGATTAA
TCGCACTTTGTCTGCTTTATCAAGCCTTTATAAATATTTGACTGAAGAGGTTGAAAATGATCAGGGAGAGCCTTATTTCT
ATCGGAATGTCATGAAGAAGGTATCCACGAAGAAGAAAAAAGAAACCCTAGCTTCTAGAGCTGAAAACATTAAACAAAAG
CTTTTTTTAGGGGATGAAACCATGGGTTTTCTAGAGTATGTAGATAAGGACTATGAACTCAAATTATCCAATCGTGCCAA
ATCTTCTTTCCGTAAAAATAAAGAGAGAGATCTAGCTATTATTGCCCTACTACTGGCCTCAGGAGTTCGTCTATCAGAAG
CCGTTAATCTTGATTTAAAAGATGTTAACCTTAATATGATGGTTATTGAGGTTATCCGCAAAGGGGGAAAACGAGATTCA
GTGAATGTTGCAGGTTTTGCTAAACCTTATTTAGAAGCTTATCTGGCTATTCGCAAGAATCGTTATAAGGCTGAAAAACA
AGACCTTGCTTTCTTTTTAACGGAATATCGAGGGGTTCCTAATCGCATGGACGCCTCCAGTATTGAAAAAATGGTTGGTA
AATACTCTCAAGATTTTAAAATTCGTGTGACTCCCCATAAGTTACGACACACATTAGCCACACGTCTTTATGATGCGACC
AAGTCCCAGGTTTTGGTCAGTCATCAATTGGGGCATGCATCGACTCAAGTTACCGATTTGTATACCCATATTGTTAACGA
TGAACAAAAAAACGCCTTAGACAAATTATAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  xerS Streptococcus pneumoniae R6

80.618

100

0.806


Multiple sequence alignment