Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   ABFU51_RS05205 Genome accession   NZ_CP155959
Coordinates   1236174..1237433 (-) Length   419 a.a.
NCBI ID   WP_323539944.1    Uniprot ID   -
Organism   Xanthomonas campestris pv. raphani strain NBC743     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1231174..1242433
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABFU51_RS05175 (ABFU51_05165) - 1231404..1232738 (+) 1335 WP_012437598.1 HAMP domain-containing sensor histidine kinase -
  ABFU51_RS05180 (ABFU51_05170) - 1232881..1233384 (-) 504 WP_343231850.1 GNAT family N-acetyltransferase -
  ABFU51_RS05185 (ABFU51_05175) - 1233369..1233659 (-) 291 WP_014508712.1 DUF1778 domain-containing protein -
  ABFU51_RS05190 (ABFU51_05180) - 1233734..1234135 (-) 402 WP_323530793.1 SymE family type I addiction module toxin -
  ABFU51_RS05195 (ABFU51_05185) coaE 1234667..1235290 (-) 624 WP_116670565.1 dephospho-CoA kinase -
  ABFU51_RS05200 (ABFU51_05190) - 1235304..1236167 (-) 864 WP_259177416.1 A24 family peptidase -
  ABFU51_RS05205 (ABFU51_05195) pilC 1236174..1237433 (-) 1260 WP_323539944.1 type II secretion system F family protein Machinery gene
  ABFU51_RS05210 (ABFU51_05200) pilA2 1237785..1238210 (+) 426 WP_323539945.1 pilin Machinery gene
  ABFU51_RS05215 (ABFU51_05205) - 1238346..1239935 (+) 1590 WP_323539946.1 phosphoethanolamine transferase -
  ABFU51_RS05220 (ABFU51_05210) - 1239949..1240575 (+) 627 WP_323539947.1 hypothetical protein -
  ABFU51_RS05225 (ABFU51_05215) - 1240545..1242071 (+) 1527 WP_323539948.1 hypothetical protein -

Sequence

Protein


Download         Length: 419 a.a.        Molecular weight: 45996.49 Da        Isoelectric Point: 10.2301

>NTDB_id=1000282 ABFU51_RS05205 WP_323539944.1 1236174..1237433(-) (pilC) [Xanthomonas campestris pv. raphani strain NBC743]
MSVARSAIKKQPVDRNTSMLQTFIWEGADKRGVKMKGEQPARNANMLRAELRRQGIVPSMVKQKPKPLFGAAGKKITPKD
IAFFSRQMATMMKSGVPIVSSLEIIGEGHKNPRMKKMVGQVRTEIEGGSSLYESISKHPVQFDELYRNLVRAGEGAGVLE
TVLDTVATYKENIEALKGKIKKALFYPAMVVAVAIIVSAILLIFVVPQFEEVFKSFGAELPAFTQLLVNASRFMVSYWWL
MLVVAVGSVVGFIFAYKRSPRMQHGLDRLILKVPVIGQIMHNSAIARFARTTAVTFKAGVPLVEALGIVAGATGNKLYEE
AVFRMRDDVSVGYPVNMAMKQVNLFPHMVIQMTAIGEEAGALDAMLFKVAEYFEEEVNNAVDALSSLLEPLIMVFIGTIV
GGMVIGMYLPIFKLGAVVG

Nucleotide


Download         Length: 1260 bp        

>NTDB_id=1000282 ABFU51_RS05205 WP_323539944.1 1236174..1237433(-) (pilC) [Xanthomonas campestris pv. raphani strain NBC743]
ATGTCAGTCGCGCGTAGCGCCATCAAGAAGCAACCGGTCGACCGGAACACAAGCATGCTGCAGACCTTCATTTGGGAAGG
GGCTGACAAGCGTGGCGTGAAGATGAAGGGAGAGCAGCCAGCCCGTAACGCCAATATGTTGCGAGCAGAGCTGCGCCGTC
AGGGCATTGTGCCCAGCATGGTGAAGCAAAAGCCGAAGCCTCTGTTCGGAGCGGCGGGGAAGAAAATTACCCCCAAAGAC
ATTGCGTTCTTTAGCCGTCAGATGGCGACAATGATGAAGTCGGGCGTGCCCATCGTCAGTTCGTTGGAGATCATTGGCGA
GGGACATAAGAACCCGCGCATGAAAAAGATGGTCGGCCAGGTCAGGACAGAGATTGAGGGTGGATCTTCGCTCTACGAGT
CCATCAGCAAACATCCCGTTCAGTTTGACGAACTCTACCGCAACCTTGTCCGTGCGGGCGAAGGCGCTGGCGTACTGGAG
ACAGTCCTCGACACGGTTGCTACCTACAAAGAAAACATTGAAGCCCTAAAGGGCAAGATCAAAAAGGCATTGTTCTACCC
TGCCATGGTGGTTGCGGTGGCAATCATCGTGAGTGCGATTTTGCTCATCTTCGTGGTGCCTCAGTTCGAAGAAGTATTCA
AGAGCTTCGGTGCTGAACTACCGGCATTCACTCAGCTCCTCGTCAACGCATCGCGCTTCATGGTCAGCTATTGGTGGTTG
ATGCTGGTAGTCGCGGTTGGATCTGTCGTTGGCTTCATCTTTGCCTACAAACGTTCTCCACGGATGCAGCATGGACTTGA
TCGATTGATCCTCAAGGTGCCCGTAATCGGGCAGATCATGCACAACAGTGCGATTGCACGCTTTGCACGGACAACTGCAG
TGACATTCAAGGCAGGCGTTCCTCTAGTGGAGGCACTTGGGATCGTAGCTGGCGCTACTGGCAATAAGCTTTATGAGGAG
GCTGTTTTCAGGATGCGGGACGATGTGTCTGTGGGTTACCCGGTCAACATGGCGATGAAACAGGTGAACCTATTTCCACA
TATGGTTATTCAAATGACTGCGATTGGCGAAGAGGCCGGCGCGCTTGATGCAATGCTCTTCAAAGTGGCTGAATACTTTG
AGGAAGAGGTCAATAATGCCGTGGACGCACTCAGCAGTCTGCTTGAACCACTGATCATGGTGTTCATCGGCACCATCGTC
GGTGGCATGGTCATCGGCATGTATCTTCCGATCTTCAAACTCGGCGCAGTGGTTGGATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(84-207)

Type II secretion system (T2SS), protein F (T2SSF)

(288-410)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Legionella pneumophila strain ERS1305867

53.202

96.897

0.516
  pilC Pseudomonas stutzeri DSM 10701

54.04

94.511

0.511
  pilC Acinetobacter baylyi ADP1

51.358

96.659

0.496
  pilC Acinetobacter baumannii D1279779

50.864

96.659

0.492
  pilG Neisseria gonorrhoeae MS11

43.609

95.227

0.415
  pilG Neisseria meningitidis 44/76-A

43.108

95.227

0.411
  pilC Vibrio cholerae strain A1552

40.25

95.465

0.384
  pilC Vibrio campbellii strain DS40M4

39.25

95.465

0.375

Multiple sequence alignment