Detailed information NTG1000282

Bioinformatically predicted

Overview

• Name: comGD
• Type: Machinery gene
• Locus tag: EL084_RS00160
• Genome accession: NZ_LR134292
• Coordinates: 26723..27163 (+)
• Length: 146 a.a.
• NCBI ID: WP_003067905.1
• Uniprot ID: -
• Organism: Streptococcus equinus strain NCTC10389
• Function: dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 21723..32163

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
EL084_RS00140 (NCTC10389_00031)	-	24101..24469 (+)	369	WP_126439865.1	DUF1033 family protein	-
EL084_RS00145 (NCTC10389_00032)	comGA	24538..25479 (+)	942	WP_126439866.1	competence type IV pilus ATPase ComGA	Machinery gene
EL084_RS00150 (NCTC10389_00033)	comGB	25403..26446 (+)	1044	WP_164557721.1	competence type IV pilus assembly protein ComGB	Machinery gene
EL084_RS00155 (NCTC10389_00034)	comGC	26446..26748 (+)	303	WP_003067906.1	competence type IV pilus major pilin ComGC	Machinery gene
EL084_RS00160 (NCTC10389_00035)	comGD	26723..27163 (+)	441	WP_003067905.1	competence type IV pilus minor pilin ComGD	Machinery gene
EL084_RS00165 (NCTC10389_00036)	comGE	27117..27410 (+)	294	WP_003067904.1	competence type IV pilus minor pilin ComGE	Machinery gene
EL084_RS00170 (NCTC10389_00037)	comGF	27394..27831 (+)	438	WP_003067903.1	competence type IV pilus minor pilin ComGF	Machinery gene
EL084_RS00175 (NCTC10389_00038)	comGG	27842..28153 (+)	312	WP_268921724.1	competence type IV pilus minor pilin ComGG	Machinery gene
EL084_RS00180 (NCTC10389_00039)	comGH	28207..29163 (+)	957	WP_115254812.1	class I SAM-dependent methyltransferase	Machinery gene
EL084_RS00185 (NCTC10389_00040)	-	29217..30416 (+)	1200	WP_126439867.1	acetate kinase	-
EL084_RS00190 (NCTC10389_00041)	-	30574..30771 (+)	198	WP_126439868.1	helix-turn-helix transcriptional regulator	-
EL084_RS00200 (NCTC10389_00042)	-	31290..31925 (+)	636	WP_126439869.1	CPBP family intramembrane glutamic endopeptidase	-

Sequence

Protein

• Length: 146 a.a.
• Molecular weight: 16534.05 Da
• Isoelectric Point: 9.8897

>NTDB_id=1000282 EL084_RS00160 WP_003067905.1 26723..27163(+) (comGD) [Streptococcus equinus strain NCTC10389]
MKKLNLKNKKIRAFTLLESLLTLGISCFIVIIFSNSVSSIFQTVEEKLFFLSFEHYYRDTQKLASLKQENQVLTISQDGI
SNSVAHMNLPDTVSVVENYKIVFDNAGGNSSLAKVKFQTKNQAIDYQLYIGSGNYKKKETKSLHTP

Nucleotide

• Length: 441 bp

>NTDB_id=1000282 EL084_RS00160 WP_003067905.1 26723..27163(+) (comGD) [Streptococcus equinus strain NCTC10389]
ATGAAAAAGCTAAACCTAAAGAATAAAAAAATCCGAGCTTTCACCCTTTTAGAGAGTTTACTAACTTTGGGAATATCTTG
TTTTATCGTTATTATATTCTCAAATTCTGTGAGTAGTATTTTTCAGACAGTAGAAGAAAAGTTGTTCTTTTTATCGTTTG
AGCATTACTATCGTGACACTCAAAAATTAGCTAGCCTTAAACAAGAAAATCAAGTTCTGACAATTTCACAAGACGGCATT
TCAAATAGTGTGGCTCATATGAATTTGCCAGATACGGTATCAGTCGTTGAAAATTATAAAATTGTTTTTGATAATGCTGG
GGGCAATTCATCTCTTGCAAAAGTAAAATTTCAGACGAAGAATCAGGCTATTGATTATCAATTATACATAGGAAGTGGTA
ATTATAAAAAGAAAGAAACTAAAAGCTTACATACTCCTTGA

Domains

No domain identified.

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comGD	Streptococcus mutans UA140	50.758	90.411	0.459
comGD	Streptococcus mutans UA159	50.758	90.411	0.459
comGD	Streptococcus gordonii str. Challis substr. CH1	49.254	91.781	0.452
comGD/cglD	Streptococcus mitis NCTC 12261	45.775	97.26	0.445
comGD/cglD	Streptococcus pneumoniae Rx1	47.727	90.411	0.432
comGD/cglD	Streptococcus pneumoniae D39	47.727	90.411	0.432
comGD/cglD	Streptococcus pneumoniae R6	47.727	90.411	0.432
comGD/cglD	Streptococcus pneumoniae TIGR4	46.97	90.411	0.425
comGD/cglD	Streptococcus mitis SK321	46.97	90.411	0.425
comGD	Lactococcus lactis subsp. cremoris KW2	38.406	94.521	0.363