Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   ABFU51_RS05235 Genome accession   NZ_CP155959
Coordinates   1244253..1245647 (-) Length   464 a.a.
NCBI ID   WP_323530785.1    Uniprot ID   -
Organism   Xanthomonas campestris pv. raphani strain NBC743     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 1239253..1250647
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABFU51_RS05220 (ABFU51_05210) - 1239949..1240575 (+) 627 WP_323539947.1 hypothetical protein -
  ABFU51_RS05225 (ABFU51_05215) - 1240545..1242071 (+) 1527 WP_323539948.1 hypothetical protein -
  ABFU51_RS05230 (ABFU51_05220) pilB 1242106..1243839 (+) 1734 WP_323539949.1 type IV-A pilus assembly ATPase PilB Machinery gene
  ABFU51_RS05235 (ABFU51_05225) pilR 1244253..1245647 (-) 1395 WP_323530785.1 sigma-54 dependent transcriptional regulator Regulator
  ABFU51_RS05240 (ABFU51_05230) - 1245856..1247466 (-) 1611 WP_014508702.1 PAS domain-containing sensor histidine kinase -
  ABFU51_RS05245 (ABFU51_05235) sucC 1247700..1248869 (+) 1170 WP_011038209.1 ADP-forming succinate--CoA ligase subunit beta -
  ABFU51_RS05250 (ABFU51_05240) sucD 1248894..1249769 (+) 876 WP_011038208.1 succinate--CoA ligase subunit alpha -
  ABFU51_RS05255 (ABFU51_05245) - 1249873..1250283 (+) 411 WP_323475266.1 CopG family ribbon-helix-helix protein -
  ABFU51_RS05260 (ABFU51_05250) - 1250287..1250589 (+) 303 WP_011038207.1 type II toxin-antitoxin system RelE/ParE family toxin -

Sequence

Protein


Download         Length: 464 a.a.        Molecular weight: 50278.72 Da        Isoelectric Point: 6.5131

>NTDB_id=1000285 ABFU51_RS05235 WP_323530785.1 1244253..1245647(-) (pilR) [Xanthomonas campestris pv. raphani strain NBC743]
MNETKSALVVDDERDIRELLVLTLGRMGLRISTAANLAEARELLASNPYDLCLTDMRLPDGNGIELVTEIARQYPQTPVA
MITAFGSMDLAVEALKAGAFDFVSKPVDISVLRGLVKHALELNNRDRPAPPPPPPEQASRLLGDSTAMESLRSTIGKVAR
SQAPVYIVGESGVGKELVARTIHEQGARAAGPFIPVNCGAIPAELMESEFFGHKKGSFTGAHADKPGLFQAAHGGTLFLD
EVAELPLQMQVKLLRAIQEKSVRPVGASGETLVDVRILSATHKDLGDLVSDGRFRHDLYYRINVIELRVPPLRERSGDLP
QLAAAIIARLARSHGRPIPLLTQSALDALNQYGFPGNVRELENILERALALAEDDLISATDLRLPAHGGHRLAASPGTAA
VEPREAVVDIDPASSALPSYIEQLERAAIQKALEENRWNKTKTAAQLGITFRALRYKLKKLGME

Nucleotide


Download         Length: 1395 bp        

>NTDB_id=1000285 ABFU51_RS05235 WP_323530785.1 1244253..1245647(-) (pilR) [Xanthomonas campestris pv. raphani strain NBC743]
ATGAACGAAACGAAAAGTGCCCTGGTCGTCGATGACGAGCGTGACATCCGCGAATTGCTTGTTCTCACCCTGGGCCGAAT
GGGGCTGCGCATCAGCACCGCCGCCAACCTGGCCGAAGCGCGCGAATTGCTGGCCAGCAACCCGTACGACCTCTGCCTGA
CGGACATGCGGCTGCCCGACGGCAACGGCATCGAGCTGGTGACCGAGATCGCGCGCCAATACCCGCAGACACCGGTGGCC
ATGATCACCGCGTTCGGCAGCATGGACCTGGCGGTGGAGGCGCTGAAAGCCGGCGCGTTCGACTTCGTCAGCAAGCCGGT
GGACATCAGCGTGCTGCGCGGCCTGGTCAAGCACGCGCTGGAATTGAACAACCGCGACCGGCCGGCGCCGCCACCGCCTC
CGCCGGAACAGGCCAGCCGCCTGCTAGGCGATTCGACCGCCATGGAGAGCCTGCGCTCCACCATCGGCAAGGTCGCGCGC
AGCCAGGCACCGGTCTACATCGTCGGCGAATCCGGCGTGGGCAAGGAACTGGTGGCCCGTACCATCCACGAGCAGGGCGC
GCGCGCGGCCGGGCCGTTCATTCCGGTCAACTGCGGCGCGATCCCGGCCGAGCTGATGGAGAGCGAGTTCTTCGGCCATA
AGAAGGGCAGTTTTACCGGCGCTCATGCCGACAAACCGGGCCTGTTTCAGGCCGCGCATGGCGGCACGCTGTTTCTGGAC
GAAGTGGCCGAGCTGCCGCTGCAGATGCAGGTCAAGCTGCTGCGCGCCATCCAGGAAAAATCAGTGCGCCCGGTCGGCGC
CTCGGGCGAGACGCTGGTGGACGTGCGCATTCTGTCGGCCACACACAAGGACCTGGGCGACCTGGTCTCCGACGGCCGCT
TTCGTCACGACCTGTATTACCGCATCAACGTGATCGAGCTGCGTGTGCCGCCGCTGCGCGAGCGCAGTGGCGACCTGCCG
CAACTGGCCGCCGCGATCATTGCGCGGCTGGCCCGCAGCCATGGCCGCCCGATCCCATTGCTCACCCAGTCCGCGCTCGA
TGCCCTGAACCAATACGGATTCCCGGGCAACGTGCGCGAGCTGGAAAACATCCTCGAACGTGCGCTTGCCCTGGCCGAAG
ACGACCTGATCAGCGCCACCGACCTGCGCCTGCCCGCCCATGGCGGCCACCGCCTTGCCGCCAGCCCGGGCACCGCTGCG
GTTGAACCGCGCGAAGCGGTGGTCGACATCGACCCTGCTTCCTCCGCCCTGCCCTCCTACATCGAACAACTGGAACGCGC
CGCGATCCAGAAGGCGCTGGAAGAAAACCGCTGGAACAAGACCAAGACCGCCGCCCAGCTCGGCATCACGTTTCGTGCGT
TGCGCTACAAGCTGAAGAAATTGGGGATGGAGTAG

Domains

Predicted by InterproScan.

Sigma-54 interaction domain (Sigma54_activat)

(142-307)

Bacterial regulatory protein, Fis family (HTH_8)

(421-461)

Response regulator receiver domain (Response_reg)

(8-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

62.851

99.784

0.627
  pilR Acinetobacter baumannii strain A118

49.138

100

0.491

Multiple sequence alignment