Detailed information of TA system
Overview
TA module
| Type | II | Classification (family/domain) | relBE/ParE-RelB |
| Location | 2096555..2097081 | Replicon | chromosome |
| Accession | NZ_CP110999 | ||
| Organism | Escherichia coli strain J53-p133 | ||
Toxin (Protein)
| Gene name | relE | Uniprot ID | S1EXL1 |
| Locus tag | ORI88_RS10210 | Protein ID | WP_000323025.1 |
| Coordinates | 2096794..2097081 (+) | Length | 96 a.a. |
Antitoxin (Protein)
| Gene name | relB | Uniprot ID | S1F6D3 |
| Locus tag | ORI88_RS10205 | Protein ID | WP_000534858.1 |
| Coordinates | 2096555..2096794 (+) | Length | 80 a.a. |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ORI88_RS10145 (2091582) | 2091582..2092349 | - | 768 | Protein_1980 | exonuclease | - |
| ORI88_RS10150 (2092442) | 2092442..2092633 | - | 192 | WP_001083297.1 | lysis protein YdfD | - |
| ORI88_RS10155 (2092630) | 2092630..2092818 | - | 189 | WP_000854559.1 | cell division inhibition protein DicB | - |
| ORI88_RS10160 (2093386) | 2093386..2093604 | - | 219 | WP_001171942.1 | protein YdfC | - |
| ORI88_RS10165 (2093634) | 2093634..2093762 | - | 129 | WP_000344964.1 | protein YdfB | - |
| ORI88_RS10170 (2093764) | 2093764..2093919 | - | 156 | WP_000379575.1 | DUF1391 family protein | - |
| ORI88_RS10175 (2094086) | 2094086..2094493 | - | 408 | WP_000448564.1 | DNA-binding transcriptional dual regulator DicA | - |
| ORI88_RS10180 (2094577) | 2094577..2094807 | + | 231 | WP_000920568.1 | dicB transcriptional regulator DicC | - |
| ORI88_RS10185 (2094791) | 2094791..2095069 | + | 279 | Protein_1988 | hypothetical protein | - |
| ORI88_RS10190 (2095104) | 2095104..2095253 | + | 150 | WP_011443592.1 | protein YdfW | - |
| ORI88_RS10195 (2095690) | 2095690..2096022 | - | 333 | WP_001301033.1 | FlxA-like family protein | - |
| ORI88_RS10200 (2096225) | 2096225..2096530 | - | 306 | WP_001326990.1 | protein YdfV | - |
| ORI88_RS10205 (2096555) | 2096555..2096794 | + | 240 | WP_000534858.1 | type II toxin-antitoxin system antitoxin RelB | Antitoxin |
| ORI88_RS10210 (2096794) | 2096794..2097081 | + | 288 | WP_000323025.1 | type II toxin-antitoxin system mRNA interferase RelE | Toxin |
| ORI88_RS10215 (2097153) | 2097153..2097308 | + | 156 | WP_000813254.1 | type I toxin-antitoxin system toxin HokD | - |
| ORI88_RS10220 (2097525) | 2097525..2097776 | + | 252 | WP_000980994.1 | protein Rem | - |
| ORI88_RS10225 (2097843) | 2097843..2098121 | + | 279 | WP_012304870.1 | hypothetical protein | - |
| ORI88_RS10230 (2098123) | 2098123..2099172 | + | 1050 | WP_001265198.1 | DUF968 domain-containing protein | - |
| ORI88_RS10235 (2099186) | 2099186..2099938 | + | 753 | WP_001047135.1 | antitermination protein | - |
| ORI88_RS10240 (2100216) | 2100216..2100305 | - | 90 | WP_120795389.1 | hypothetical protein | - |
| ORI88_RS10245 (2100360) | 2100360..2100572 | - | 213 | WP_000087756.1 | cold shock-like protein CspF | - |
| ORI88_RS10250 (2100873) | 2100873..2101088 | + | 216 | WP_000066484.1 | cold shock-like protein CspB | - |
| ORI88_RS10255 (2101452) | 2101452..2101622 | - | 171 | WP_211180497.1 | putative zinc-binding protein YnfU | - |
| ORI88_RS10260 (2101842) | 2101842..2102057 | + | 216 | WP_000839590.1 | phage lysis protein EssD | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| inside | Prophage | - | - | 2077964..2118322 | 40358 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Similar Proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|