Detailed information of TA system
Overview
TA module
| Type | II | Classification (family/domain) | relBE/ParE-RelB |
| Location | 2246797..2247323 | Replicon | chromosome |
| Accession | NZ_CP107003 | ||
| Organism | Escherichia coli strain SY22B1 | ||
Toxin (Protein)
| Gene name | relE | Uniprot ID | S1EXL1 |
| Locus tag | OFB13_RS10945 | Protein ID | WP_000323025.1 |
| Coordinates | 2247036..2247323 (+) | Length | 96 a.a. |
Antitoxin (Protein)
| Gene name | relB | Uniprot ID | S1F6D3 |
| Locus tag | OFB13_RS10940 | Protein ID | WP_000534858.1 |
| Coordinates | 2246797..2247036 (+) | Length | 80 a.a. |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| OFB13_RS10880 (2241824) | 2241824..2242591 | - | 768 | Protein_2125 | exonuclease | - |
| OFB13_RS10885 (2242684) | 2242684..2242875 | - | 192 | WP_001083297.1 | lysis protein YdfD | - |
| OFB13_RS10890 (2242872) | 2242872..2243060 | - | 189 | WP_000854559.1 | cell division inhibition protein DicB | - |
| OFB13_RS10895 (2243628) | 2243628..2243846 | - | 219 | WP_001171942.1 | protein YdfC | - |
| OFB13_RS10900 (2243876) | 2243876..2244004 | - | 129 | WP_000344964.1 | protein YdfB | - |
| OFB13_RS10905 (2244006) | 2244006..2244161 | - | 156 | WP_000379575.1 | DUF1391 family protein | - |
| OFB13_RS10910 (2244328) | 2244328..2244735 | - | 408 | WP_000448564.1 | DNA-binding transcriptional dual regulator DicA | - |
| OFB13_RS10915 (2244819) | 2244819..2245049 | + | 231 | WP_000920568.1 | dicB transcriptional regulator DicC | - |
| OFB13_RS10920 (2245033) | 2245033..2245311 | + | 279 | Protein_2133 | protein YdfX | - |
| OFB13_RS10925 (2245346) | 2245346..2245495 | + | 150 | WP_011443592.1 | protein YdfW | - |
| OFB13_RS10930 (2245932) | 2245932..2246264 | - | 333 | WP_001301033.1 | FlxA-like family protein | - |
| OFB13_RS10935 (2246467) | 2246467..2246772 | - | 306 | WP_001326990.1 | protein YdfV | - |
| OFB13_RS10940 (2246797) | 2246797..2247036 | + | 240 | WP_000534858.1 | type II toxin-antitoxin system antitoxin RelB | Antitoxin |
| OFB13_RS10945 (2247036) | 2247036..2247323 | + | 288 | WP_000323025.1 | type II toxin-antitoxin system mRNA interferase RelE | Toxin |
| OFB13_RS10950 (2247395) | 2247395..2247550 | + | 156 | WP_000813254.1 | type I toxin-antitoxin system toxin HokD | - |
| OFB13_RS10955 (2247767) | 2247767..2248018 | + | 252 | WP_000980994.1 | protein Rem | - |
| OFB13_RS10960 (2248085) | 2248085..2248363 | + | 279 | WP_012304870.1 | hypothetical protein | - |
| OFB13_RS10965 (2248365) | 2248365..2249414 | + | 1050 | WP_001265198.1 | DUF968 domain-containing protein | - |
| OFB13_RS10970 (2249428) | 2249428..2250180 | + | 753 | WP_001047135.1 | antitermination protein | - |
| OFB13_RS10975 (2250458) | 2250458..2250547 | - | 90 | WP_120795389.1 | hypothetical protein | - |
| OFB13_RS10980 (2250602) | 2250602..2250814 | - | 213 | WP_000087756.1 | cold shock-like protein CspF | - |
| OFB13_RS10985 (2251115) | 2251115..2251330 | + | 216 | WP_000066484.1 | cold shock-like protein CspB | - |
| OFB13_RS10990 (2251694) | 2251694..2251864 | - | 171 | WP_211180497.1 | putative zinc-binding protein YnfU | - |
| OFB13_RS10995 (2252084) | 2252084..2252299 | + | 216 | WP_000839590.1 | phage lysis protein EssD | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| inside | Prophage | - | - | 2226870..2268564 | 41694 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Similar Proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|