MGE detailed information
MGE type: Genomic_island MGE length: 11675 bp
Accession: NZ_LS483297 Location: 631073..642747 Organism: Escherichia coli strain NCTC11023 Replicon: chromosome
Accession: NZ_LS483297 Location: 631073..642747 Organism: Escherichia coli strain NCTC11023 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| DQM98_RS03285 () | 626074..626508 | - | 435 | WP_000948824.1 | PTS sugar transporter subunit IIA | - |
| DQM98_RS03290 () | 626526..627404 | - | 879 | WP_001300474.1 | PTS system mannose/fructose/sorbose family transporter subunit IID | - |
| DQM98_RS03295 () | 627394..628173 | - | 780 | WP_000406214.1 | PTS mannose/fructose/sorbose/N-acetylgalactosamine transporter subunit IIC | - |
| DQM98_RS03300 () | 628184..628657 | - | 474 | WP_001295547.1 | PTS N-acetylgalactosamine transporter subunit IIB | - |
| DQM98_RS03305 () | 628680..629960 | - | 1281 | WP_000681903.1 | tagatose-bisphosphate aldolase subunit KbaZ | - |
| DQM98_RS03315 () | 630209..631018 | + | 810 | WP_000072187.1 | aga operon transcriptional regulator AgaR | - |
| DQM98_RS03320 () | 631073..631537 | - | 465 | WP_000347273.1 | type II toxin-antitoxin system ribonuclease toxin YhaV | Toxin Detail |
| DQM98_RS03325 () | 631537..631872 | - | 336 | WP_021547164.1 | type II toxin-antitoxin system antitoxin PrlF | Antitoxin Detail |
| DQM98_RS03330 () | 632021..633592 | - | 1572 | WP_001753084.1 | galactarate dehydratase | - |
| DQM98_RS03335 () | 633967..635301 | + | 1335 | WP_000599651.1 | galactarate/glucarate/glycerate transporter GarP | - |
| DQM98_RS03340 () | 635317..636087 | + | 771 | WP_111732345.1 | 2-dehydro-3-deoxyglucarate aldolase | - |
| DQM98_RS03345 () | 636117..637007 | + | 891 | WP_001303675.1 | 2-hydroxy-3-oxopropionate reductase | - |
| DQM98_RS03350 () | 637104..638249 | + | 1146 | WP_001300387.1 | glycerate 2-kinase | - |
| DQM98_RS03360 () | 639272..640459 | - | 1188 | WP_089622093.1 | YhaC family protein | - |
| DQM98_RS03365 () | 640481..641020 | - | 540 | WP_040061853.1 | hypothetical protein | - |
| DQM98_RS24660 () | 641276..641494 | - | 219 | WP_001301311.1 | transcriptional activator TdcR | - |
| DQM98_RS03375 () | 641809..642747 | + | 939 | WP_000104211.1 | transcriptional regulator TdcA | - |
| DQM98_RS03380 () | 642846..643835 | + | 990 | WP_000548347.1 | bifunctional threonine ammonia-lyase/L-serine ammonia-lyase TdcB | - |
| DQM98_RS03385 () | 643857..645188 | + | 1332 | WP_000107723.1 | threonine/serine transporter TdcC | - |
| DQM98_RS03390 () | 645214..646422 | + | 1209 | WP_001295545.1 | propionate kinase | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Escherichia coli str. K-12 substr. MC4100 | Genomic island | TA20080 | HG738867 | 3504819..3516493 | 0.007 | |
| Escherichia coli str. K-12 substr. W3110 | Genomic island | TA21455 | NC_007779 | 3265982..3277656 | 0.007 | |
| Escherichia coli HS | Genomic island | TA22436 | NC_009800 | 3314965..3326421 | 0.01 | |
| Escherichia coli str. K-12 substr. W3110 strain K-12 substr. ZK126 | Genomic island | TA68442 | NZ_CP017979 | 3158126..3169800 | 0.007 | |
| Escherichia coli C | Genomic island | TA75057 | NZ_CP020543 | 640607..652281 | 0.007 | |
| Escherichia coli str. K-12 substr. MC4100 strain K-12 | Genomic island | TA285025 | NZ_HG738867 | 3504819..3516493 | 0.007 |