MGE detailed information
MGE type: Genomic_island MGE length: 10770 bp
Accession: NZ_CP116923 Location: 590442..601211 Organism: Escherichia coli strain MLI104K1 Replicon: chromosome
Accession: NZ_CP116923 Location: 590442..601211 Organism: Escherichia coli strain MLI104K1 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| NL419_RS03320 (585443) | 585443..585877 | - | 435 | WP_072667546.1 | PTS galactosamine/N-acetylgalactosamine transporter subunit IIA | - |
| NL419_RS03325 (585895) | 585895..586773 | - | 879 | WP_001295548.1 | PTS N-acetylgalactosamine transporter subunit IID | - |
| NL419_RS03330 (586763) | 586763..587542 | - | 780 | WP_000406209.1 | PTS N-acetylgalactosamine transporter subunit IIC | - |
| NL419_RS03335 (587553) | 587553..588026 | - | 474 | WP_001336162.1 | PTS N-acetylgalactosamine transporter subunit IIB | - |
| NL419_RS03340 (588049) | 588049..589329 | - | 1281 | WP_000681920.1 | tagatose-bisphosphate aldolase subunit KbaZ | - |
| NL419_RS03345 (589578) | 589578..590387 | + | 810 | WP_000072187.1 | aga operon transcriptional regulator AgaR | - |
| NL419_RS03350 (590442) | 590442..590906 | - | 465 | WP_000347273.1 | type II toxin-antitoxin system ribonuclease toxin YhaV | Toxin Detail |
| NL419_RS03355 (590906) | 590906..591241 | - | 336 | WP_001307405.1 | type II toxin-antitoxin system antitoxin PrlF | Antitoxin Detail |
| NL419_RS03360 (591390) | 591390..592961 | - | 1572 | WP_001273753.1 | galactarate dehydratase | - |
| NL419_RS03365 (593336) | 593336..594670 | + | 1335 | WP_000599636.1 | galactarate/glucarate/glycerate transporter GarP | - |
| NL419_RS03370 (594686) | 594686..595456 | + | 771 | WP_001058209.1 | 2-dehydro-3-deoxyglucarate aldolase | - |
| NL419_RS03375 (595486) | 595486..596376 | + | 891 | WP_001303675.1 | 2-hydroxy-3-oxopropionate reductase | - |
| NL419_RS03380 (596473) | 596473..597618 | + | 1146 | WP_001300387.1 | glycerate 2-kinase | - |
| NL419_RS03395 (599365) | 599365..599484 | - | 120 | Protein_573 | hypothetical protein | - |
| NL419_RS03400 (599740) | 599740..599958 | - | 219 | WP_001301311.1 | transcriptional activator TdcR | - |
| NL419_RS03405 (600273) | 600273..601211 | + | 939 | WP_000104211.1 | transcriptional regulator TdcA | - |
| NL419_RS03410 (601310) | 601310..602299 | + | 990 | WP_000548347.1 | bifunctional threonine ammonia-lyase/L-serine ammonia-lyase TdcB | - |
| NL419_RS03415 (602321) | 602321..603652 | + | 1332 | WP_000107723.1 | threonine/serine transporter TdcC | - |
| NL419_RS03420 (603678) | 603678..604886 | + | 1209 | WP_072667251.1 | propionate kinase | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Escherichia coli str. K-12 substr. MC4100 | Genomic island | TA20080 | HG738867 | 3504819..3516493 | 0.006 | |
| Escherichia coli str. K-12 substr. W3110 | Genomic island | TA21455 | NC_007779 | 3265982..3277656 | 0.006 | |
| Escherichia coli HS | Genomic island | TA22436 | NC_009800 | 3314965..3326421 | 0.008 | |
| Escherichia coli str. K-12 substr. W3110 strain K-12 substr. ZK126 | Genomic island | TA68442 | NZ_CP017979 | 3158126..3169800 | 0.006 | |
| Escherichia coli C | Genomic island | TA75057 | NZ_CP020543 | 640607..652281 | 0.006 | |
| Escherichia coli str. K-12 substr. MC4100 strain K-12 | Genomic island | TA285025 | NZ_HG738867 | 3504819..3516493 | 0.006 |