MGE detailed information
MGE type: Conjugative plasmid MGE length: 99158 bp
Accession: NZ_CP099589 Location: 1..99158 Organism: Escherichia coli strain EMG2 Replicon: plasmid unnamed
Accession: NZ_CP099589 Location: 1..99158 Organism: Escherichia coli strain EMG2 Replicon: plasmid unnamed
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| NHF38_RS22750 (1) | 1..978 | + | 978 | WP_000361610.1 | RepB family plasmid replication initiator protein | - |
| NHF38_RS22755 (1263) | 1263..2003 | - | 741 | WP_001066941.1 | tyrosine-type recombinase/integrase | - |
| NHF38_RS22760 (2124) | 2124..2258 | - | 135 | Protein_2 | serine/threonine protein kinase | - |
| NHF38_RS22765 (2760) | 2760..4259 | - | 1500 | WP_010892530.1 | alpha/beta hydrolase | - |
| NHF38_RS22770 (4352) | 4352..5299 | - | 948 | WP_001193612.1 | Outer membrane protease OmpP | VF |
| NHF38_RS22775 (5948) | 5948..10135 | + | 4188 | WP_225390950.1 | hypothetical protein | VF |
| NHF38_RS22780 (10771) | 10771..16080 | + | 5310 | WP_040078930.1 | autotransporter outer membrane beta-barrel domain-containing protein | - |
| NHF38_RS22785 (16833) | 16833..17525 | + | 693 | WP_000286435.1 | hypothetical protein | - |
| NHF38_RS22790 (18065) | 18065..18418 | - | 354 | Protein_8 | IS3 family transposase | - |
| NHF38_RS22795 (18479) | 18479..18628 | - | 150 | Protein_9 | IS66 family transposase IS679 | Transposase |
| NHF38_RS22800 (18720) | 18720..19948 | + | 1229 | WP_088895425.1 | IS3 family transposase IS2 | Transposase |
| NHF38_RS22805 (19959) | 19959..21245 | - | 1287 | Protein_11 | IS66 family transposase | - |
| NHF38_RS22815 (22561) | 22561..22695 | - | 135 | Protein_13 | IS3 family transposase | - |
| NHF38_RS22820 (23370) | 23370..23558 | + | 189 | WP_000131420.1 | hypothetical protein | - |
| NHF38_RS22825 (24161) | 24161..24574 | + | 414 | WP_000483319.1 | hypothetical protein | - |
| NHF38_RS22830 (24749) | 24749..25144 | + | 396 | WP_000491615.1 | polymer-forming cytoskeletal protein | - |
| NHF38_RS22835 (25308) | 25308..25721 | + | 414 | WP_001351580.1 | hypothetical protein | - |
| NHF38_RS22840 (25831) | 25831..26892 | + | 1062 | WP_001092154.1 | EAL domain-containing protein | - |
| NHF38_RS22845 (27483) | 27483..30491 | - | 3009 | WP_001143750.1 | Tn3 family transposase ISEc63 | Transposase |
| NHF38_RS22850 (30655) | 30655..31206 | + | 552 | WP_001235704.1 | Tn3 family transposase TnpR_Tn3 | Transposase |
| NHF38_RS22855 (31222) | 31222..33318 | + | 2097 | WP_000422420.1 | hypothetical protein | - |
| NHF38_RS22860 (33697) | 33697..33771 | - | 75 | WP_001442103.1 | RepA leader peptide Tap | - |
| NHF38_RS22865 (34005) | 34005..34262 | - | 258 | WP_000083834.1 | replication regulatory protein RepA | - |
| NHF38_RS22870 (34546) | 34546..34695 | - | 150 | WP_001312851.1 | Hok/Gef family protein | Toxin Detail |
| - (34739) | 34739..34800 | + | 62 | NuclAT_1 | - | Antitoxin Detail |
| - (34739) | 34739..34800 | + | 62 | NuclAT_1 | - | Antitoxin Detail |
| - (34739) | 34739..34800 | + | 62 | NuclAT_1 | - | Antitoxin Detail |
| - (34739) | 34739..34800 | + | 62 | NuclAT_1 | - | Antitoxin Detail |
| NHF38_RS22875 (35096) | 35096..35407 | + | 312 | WP_000802277.1 | hypothetical protein | - |
| NHF38_RS22880 (35588) | 35588..35674 | - | 87 | Protein_26 | endonuclease | - |
| NHF38_RS22885 (35872) | 35872..36060 | - | 189 | WP_001345829.1 | hypothetical protein | - |
| NHF38_RS22890 (36195) | 36195..36362 | - | 168 | Protein_28 | ProQ/FINO family protein | - |
| NHF38_RS22900 (37624) | 37624..38016 | - | 393 | Protein_30 | fertility inhibition protein FinO | - |
| NHF38_RS22905 (38071) | 38071..38817 | - | 747 | WP_000205776.1 | conjugal transfer pilus acetylase TraX | - |
| NHF38_RS22910 (38837) | 38837..44107 | - | 5271 | WP_000987005.1 | Multifunctional conjugation protein TraI | Relaxase |
| NHF38_RS22915 (44189) | 44189..44416 | + | 228 | WP_000450532.1 | toxin-antitoxin system antitoxin VapB | - |
| NHF38_RS22920 (44416) | 44416..44814 | + | 399 | WP_000911324.1 | type II toxin-antitoxin system VapC family toxin | Toxin Detail |
| NHF38_RS22925 (44823) | 44823..46976 | - | 2154 | WP_000009350.1 | type IV conjugative transfer system coupling protein TraD | - |
| NHF38_RS22930 (47229) | 47229..47960 | - | 732 | WP_000850422.1 | conjugal transfer complement resistance protein TraT | - |
| NHF38_RS22935 (47985) | 47985..48506 | - | 522 | WP_000632670.1 | conjugal transfer entry exclusion protein TraS | - |
| NHF38_RS22940 (48539) | 48539..51355 | - | 2817 | WP_001007055.1 | conjugal transfer mating-pair stabilization protein TraG | - |
| NHF38_RS22945 (51352) | 51352..52725 | - | 1374 | WP_021553026.1 | conjugal transfer pilus assembly protein TraH | - |
| NHF38_RS22950 (52725) | 52725..53105 | - | 381 | WP_001366201.1 | F-type conjugal transfer protein TrbF | - |
| NHF38_RS22955 (53092) | 53092..53433 | - | 342 | WP_001443031.1 | P-type conjugative transfer protein TrbJ | - |
| NHF38_RS22960 (53363) | 53363..53908 | - | 546 | WP_000059850.1 | type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB | - |
| NHF38_RS22965 (53895) | 53895..54179 | - | 285 | WP_000624109.1 | type-F conjugative transfer system pilin chaperone TraQ | - |
| NHF38_RS22970 (54260) | 54260..54574 | + | 315 | WP_000415566.1 | protein ArtA | - |
| NHF38_RS22975 (54576) | 54576..54923 | - | 348 | WP_001287913.1 | conjugal transfer protein TrbA | - |
| NHF38_RS22980 (54939) | 54939..55682 | - | 744 | WP_001030367.1 | type-F conjugative transfer system pilin assembly protein TraF | - |
| NHF38_RS22985 (55675) | 55675..55932 | - | 258 | WP_000864318.1 | conjugal transfer protein TrbE | - |
| NHF38_RS22990 (55959) | 55959..57767 | - | 1809 | WP_000821835.1 | type-F conjugative transfer system mating-pair stabilization protein TraN | - |
| NHF38_RS22995 (57764) | 57764..58402 | - | 639 | WP_000777688.1 | type-F conjugative transfer system pilin assembly protein TrbC | - |
| NHF38_RS23000 (58411) | 58411..59403 | - | 993 | WP_000830185.1 | conjugal transfer pilus assembly protein TraU | - |
| NHF38_RS23005 (59400) | 59400..60032 | - | 633 | WP_001203720.1 | type-F conjugative transfer system protein TraW | - |
| NHF38_RS23010 (60029) | 60029..60415 | - | 387 | WP_000099690.1 | type-F conjugative transfer system protein TrbI | - |
| NHF38_RS23015 (60412) | 60412..63039 | - | 2628 | WP_001064243.1 | type IV secretion system protein TraC | - |
| NHF38_RS23020 (63199) | 63199..63420 | - | 222 | WP_001278689.1 | conjugal transfer protein TraR | - |
| NHF38_RS23025 (63555) | 63555..64070 | - | 516 | WP_010892541.1 | type IV conjugative transfer system lipoprotein TraV | - |
| NHF38_RS23030 (64067) | 64067..64318 | - | 252 | WP_001038342.1 | conjugal transfer protein TrbG | - |
| NHF38_RS23035 (64330) | 64330..64527 | - | 198 | WP_001443030.1 | conjugal transfer protein TrbD | - |
| NHF38_RS23040 (64514) | 64514..65104 | - | 591 | WP_000002792.1 | conjugal transfer pilus-stabilizing protein TraP | - |
| NHF38_RS23045 (65094) | 65094..66521 | - | 1428 | WP_000146685.1 | F-type conjugal transfer pilus assembly protein TraB | - |
| NHF38_RS23050 (66521) | 66521..67249 | - | 729 | WP_001230787.1 | type-F conjugative transfer system secretin TraK | - |
| NHF38_RS23055 (67236) | 67236..67802 | - | 567 | WP_000399792.1 | type IV conjugative transfer system protein TraE | - |
| NHF38_RS23060 (67824) | 67824..68135 | - | 312 | WP_000012106.1 | type IV conjugative transfer system protein TraL | - |
| NHF38_RS23065 (68150) | 68150..68515 | - | 366 | WP_000994779.1 | type IV conjugative transfer system pilin TraA | - |
| NHF38_RS23070 (68548) | 68548..68949 | - | 402 | WP_001369361.1 | conjugal transfer relaxosome DNA-bindin protein TraY | - |
| NHF38_RS23075 (69042) | 69042..69731 | - | 690 | WP_000283385.1 | conjugal transfer transcriptional regulator TraJ | - |
| NHF38_RS23080 (69918) | 69918..70301 | - | 384 | WP_001151527.1 | conjugal transfer relaxosome DNA-binding protein TraM | - |
| NHF38_RS23085 (70622) | 70622..71224 | + | 603 | WP_000243701.1 | hypothetical protein | VF |
| NHF38_RS23090 (71520) | 71520..72341 | - | 822 | WP_001234417.1 | DUF932 domain-containing protein | - |
| NHF38_RS23095 (72460) | 72460..72747 | - | 288 | WP_000107542.1 | hypothetical protein | - |
| NHF38_RS23100 (72772) | 72772..72978 | - | 207 | WP_000547965.1 | hypothetical protein | - |
| NHF38_RS23105 (73048) | 73048..73344 | + | 297 | Protein_71 | hypothetical protein | - |
| NHF38_RS23110 (73645) | 73645..73770 | - | 126 | WP_096937776.1 | type I toxin-antitoxin system Hok family toxin | Toxin Detail |
| NHF38_RS23115 (73712) | 73712..73861 | - | 150 | Protein_73 | DUF5431 family protein | - |
| - (73868) | 73868..74066 | - | 199 | NuclAT_0 | - | Antitoxin Detail |
| - (73868) | 73868..74066 | - | 199 | NuclAT_0 | - | Antitoxin Detail |
| - (73868) | 73868..74066 | - | 199 | NuclAT_0 | - | Antitoxin Detail |
| - (73868) | 73868..74066 | - | 199 | NuclAT_0 | - | Antitoxin Detail |
| NHF38_RS23120 (74035) | 74035..74797 | - | 763 | Protein_74 | plasmid SOS inhibition protein A | - |
| NHF38_RS23125 (74794) | 74794..75228 | - | 435 | WP_000845928.1 | conjugation system SOS inhibitor PsiB | - |
| NHF38_RS23130 (75283) | 75283..77241 | - | 1959 | WP_000117173.1 | ParB/RepB/Spo0J family partition protein | - |
| NHF38_RS23135 (77307) | 77307..77540 | - | 234 | WP_000005990.1 | DUF905 family protein | - |
| NHF38_RS23140 (77597) | 77597..78136 | - | 540 | WP_000290801.1 | single-stranded DNA-binding protein | - |
| NHF38_RS23145 (78942) | 78942..79133 | - | 192 | WP_001027495.1 | hypothetical protein | - |
| NHF38_RS23150 (79130) | 79130..79552 | - | 423 | WP_000271685.1 | DUF1380 family protein | - |
| NHF38_RS23155 (79599) | 79599..80024 | - | 426 | WP_001198920.1 | antirestriction protein | - |
| NHF38_RS23160 (80438) | 80438..81214 | - | 777 | WP_001005032.1 | hypothetical protein | - |
| NHF38_RS23165 (81260) | 81260..81814 | - | 555 | WP_001358893.1 | DUF1380 family protein | - |
| NHF38_RS23170 (81708) | 81708..81929 | - | 222 | WP_001104904.1 | hypothetical protein | - |
| NHF38_RS23175 (81930) | 81930..82613 | - | 684 | WP_000085939.1 | DNA methylase | - |
| NHF38_RS23180 (82690) | 82690..82995 | - | 306 | WP_010892536.1 | hypothetical protein | - |
| NHF38_RS23185 (82999) | 82999..83900 | - | 902 | Protein_87 | DUF1281 domain-containing protein | - |
| NHF38_RS23190 (84853) | 84853..85824 | - | 972 | WP_000817031.1 | ParB/RepB/Spo0J family plasmid partition protein | - |
| NHF38_RS23195 (85824) | 85824..86990 | - | 1167 | WP_000772446.1 | hypothetical protein | VF |
| NHF38_RS23200 (87578) | 87578..88333 | - | 756 | WP_000852146.1 | replication initiation protein RepE | - |
| NHF38_RS23205 (89107) | 89107..89913 | - | 807 | WP_000016982.1 | site-specific integrase | - |
| NHF38_RS23210 (89914) | 89914..90219 | - | 306 | WP_001159868.1 | type II toxin-antitoxin system toxin CcdB | Toxin Detail |
| NHF38_RS23215 (90221) | 90221..90439 | - | 219 | WP_000813634.1 | type II toxin-antitoxin system antitoxin CcdA | - |
| NHF38_RS23220 (91019) | 91019..92107 | + | 1089 | WP_000952217.1 | transcriptional repressor PifC | - |
| NHF38_RS23225 (92109) | 92109..94334 | + | 2226 | WP_000698737.1 | P-loop NTPase fold protein | - |
| NHF38_RS23230 (94384) | 94384..95283 | - | 900 | WP_000963206.1 | nucleotide-binding protein | - |
| NHF38_RS23235 (95273) | 95273..95563 | - | 291 | WP_000538310.1 | hypothetical protein | - |
| NHF38_RS23240 (97678) | 97678..98319 | + | 642 | WP_000990665.1 | hypothetical protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Escherichia coli K-12 | Conjugative plasmid | TA6145, TA6369, TA20275 | NC_002483 | 1..99159 | 0 |