MGE detailed information
MGE type: Genomic_island MGE length: 11675 bp
Accession: NZ_CP090305 Location: 1597522..1609196 Organism: Escherichia coli strain Z503 Replicon: chromosome
Accession: NZ_CP090305 Location: 1597522..1609196 Organism: Escherichia coli strain Z503 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LXF06_RS07595 (1592523) | 1592523..1592957 | - | 435 | WP_000948824.1 | PTS galactosamine/N-acetylgalactosamine transporter subunit IIA | - |
| LXF06_RS07600 (1592975) | 1592975..1593853 | - | 879 | WP_001300474.1 | PTS N-acetylgalactosamine transporter subunit IID | - |
| LXF06_RS07605 (1593843) | 1593843..1594622 | - | 780 | WP_000406214.1 | PTS N-acetylgalactosamine transporter subunit IIC | - |
| LXF06_RS07610 (1594633) | 1594633..1595106 | - | 474 | WP_001295547.1 | PTS N-acetylgalactosamine transporter subunit IIB | - |
| LXF06_RS07615 (1595129) | 1595129..1596409 | - | 1281 | WP_088474653.1 | tagatose-bisphosphate aldolase subunit KbaZ | - |
| LXF06_RS07620 (1596658) | 1596658..1597467 | + | 810 | WP_000072187.1 | aga operon transcriptional regulator AgaR | - |
| LXF06_RS07625 (1597522) | 1597522..1597986 | - | 465 | WP_241415748.1 | type II toxin-antitoxin system ribonuclease toxin YhaV | Toxin Detail |
| LXF06_RS07630 (1597986) | 1597986..1598321 | - | 336 | WP_021547164.1 | type II toxin-antitoxin system antitoxin PrlF | Antitoxin Detail |
| LXF06_RS07635 (1598470) | 1598470..1600041 | - | 1572 | WP_241415749.1 | galactarate dehydratase | - |
| LXF06_RS07640 (1600416) | 1600416..1601750 | + | 1335 | WP_000599651.1 | galactarate/glucarate/glycerate transporter GarP | - |
| LXF06_RS07645 (1601766) | 1601766..1602536 | + | 771 | WP_001058209.1 | 2-dehydro-3-deoxyglucarate aldolase | - |
| LXF06_RS07650 (1602566) | 1602566..1603456 | + | 891 | WP_001303675.1 | 2-hydroxy-3-oxopropionate reductase | - |
| LXF06_RS07655 (1603553) | 1603553..1604698 | + | 1146 | WP_001300387.1 | glycerate 2-kinase | - |
| LXF06_RS07665 (1605721) | 1605721..1606908 | - | 1188 | WP_021547163.1 | YhaC family protein | - |
| LXF06_RS07670 (1606930) | 1606930..1607469 | - | 540 | WP_000675733.1 | protein YhaB | - |
| LXF06_RS07675 (1607725) | 1607725..1607943 | - | 219 | WP_001301311.1 | transcriptional activator TdcR | - |
| LXF06_RS07680 (1608258) | 1608258..1609196 | + | 939 | WP_000104211.1 | transcriptional regulator TdcA | - |
| LXF06_RS07685 (1609295) | 1609295..1610284 | + | 990 | WP_000548347.1 | bifunctional threonine ammonia-lyase/L-serine ammonia-lyase TdcB | - |
| LXF06_RS07690 (1610306) | 1610306..1611637 | + | 1332 | WP_000107723.1 | threonine/serine transporter TdcC | - |
| LXF06_RS07695 (1611663) | 1611663..1612871 | + | 1209 | WP_241415750.1 | propionate kinase | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Escherichia coli str. K-12 substr. MC4100 | Genomic island | TA20080 | HG738867 | 3504819..3516493 | 0.007 | |
| Escherichia coli str. K-12 substr. W3110 | Genomic island | TA21455 | NC_007779 | 3265982..3277656 | 0.007 | |
| Escherichia coli HS | Genomic island | TA22436 | NC_009800 | 3314965..3326421 | 0.009 | |
| Escherichia coli str. K-12 substr. W3110 strain K-12 substr. ZK126 | Genomic island | TA68442 | NZ_CP017979 | 3158126..3169800 | 0.007 | |
| Escherichia coli C | Genomic island | TA75057 | NZ_CP020543 | 640607..652281 | 0.007 | |
| Escherichia coli str. K-12 substr. MC4100 strain K-12 | Genomic island | TA285025 | NZ_HG738867 | 3504819..3516493 | 0.007 |