MGE detailed information
MGE type: Conjugative plasmid MGE length: 98786 bp
Accession: NZ_CP048440 Location: 1..98786 Organism: Escherichia coli strain NBRC 3301 Replicon: plasmid putative_pEcol1
Accession: NZ_CP048440 Location: 1..98786 Organism: Escherichia coli strain NBRC 3301 Replicon: plasmid putative_pEcol1
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| GXM24_RS22545 () | 1..978 | + | 978 | WP_000361610.1 | RepB family plasmid replication initiator protein | - |
| GXM24_RS22550 () | 1263..2003 | - | 741 | WP_001066941.1 | tyrosine-type recombinase/integrase | - |
| GXM24_RS22555 () | 2124..2384 | - | 261 | Protein_2 | hypothetical protein | - |
| GXM24_RS22560 () | 2760..4247 | - | 1488 | WP_072145210.1 | alpha/beta hydrolase | - |
| GXM24_RS22565 () | 4352..5299 | - | 948 | WP_001193612.1 | Outer membrane protease OmpP | VF |
| GXM24_RS22570 () | 6020..10135 | + | 4116 | WP_000995793.1 | Outer membrane protein IcsA autotransporter | VF |
| GXM24_RS22575 () | 10771..15708 | + | 4938 | WP_064754094.1 | autotransporter outer membrane beta-barrel domain-containing protein | - |
| GXM24_RS22580 () | 16461..17153 | + | 693 | WP_000286435.1 | hypothetical protein | - |
| GXM24_RS22585 () | 17693..18046 | - | 354 | Protein_8 | IS3 family transposase | - |
| GXM24_RS22590 () | 18107..18256 | - | 150 | Protein_9 | IS66 family transposase IS679 | Transposase |
| GXM24_RS22595 () | 18348..19576 | + | 1229 | WP_088895425.1 | IS3 family transposase IS2 | Transposase |
| GXM24_RS22600 () | 19587..20873 | - | 1287 | Protein_11 | IS66 family transposase | - |
| GXM24_RS22615 () | 22189..22323 | - | 135 | Protein_13 | IS3 family transposase | - |
| GXM24_RS22620 () | 22998..23186 | + | 189 | WP_000131420.1 | hypothetical protein | - |
| GXM24_RS22625 () | 23789..24202 | + | 414 | WP_000483319.1 | hypothetical protein | - |
| GXM24_RS22630 () | 24308..24772 | + | 465 | WP_001351581.1 | polymer-forming cytoskeletal protein | - |
| GXM24_RS22635 () | 24936..25349 | + | 414 | WP_001351580.1 | hypothetical protein | - |
| GXM24_RS22640 () | 25459..26520 | + | 1062 | WP_001092154.1 | EAL domain-containing protein | - |
| GXM24_RS22645 () | 27111..30119 | - | 3009 | WP_001143750.1 | Tn3 family transposase ISEc63 | Transposase |
| GXM24_RS22650 () | 30283..30834 | + | 552 | WP_001235704.1 | Tn3 family transposase TnpR_Tn3 | Transposase |
| GXM24_RS22655 () | 30850..32946 | + | 2097 | WP_000422420.1 | hypothetical protein | - |
| GXM24_RS22660 () | 33325..33399 | - | 75 | WP_001442103.1 | RepA leader peptide Tap | - |
| GXM24_RS22665 () | 33633..33890 | - | 258 | WP_000083834.1 | replication regulatory protein RepA | - |
| GXM24_RS22670 () | 34174..34380 | - | 207 | WP_001362723.1 | type I toxin-antitoxin system Hok family toxin | Toxin Detail |
| - () | 34367..34428 | + | 62 | NuclAT_1 | - | Antitoxin Detail |
| - () | 34367..34428 | + | 62 | NuclAT_1 | - | Antitoxin Detail |
| - () | 34367..34428 | + | 62 | NuclAT_1 | - | Antitoxin Detail |
| - () | 34367..34428 | + | 62 | NuclAT_1 | - | Antitoxin Detail |
| GXM24_RS22675 () | 34724..35035 | + | 312 | WP_000802277.1 | hypothetical protein | - |
| GXM24_RS23145 () | 35216..35302 | - | 87 | Protein_26 | endonuclease | - |
| GXM24_RS22680 () | 35500..35688 | - | 189 | WP_001345829.1 | hypothetical protein | - |
| GXM24_RS22685 () | 35823..35990 | - | 168 | Protein_28 | conjugal transfer protein | - |
| GXM24_RS22700 () | 37252..37644 | - | 393 | Protein_30 | fertility inhibition protein FinO | - |
| GXM24_RS22705 () | 37699..38445 | - | 747 | WP_000205776.1 | conjugal transfer pilus acetylase TraX | - |
| GXM24_RS22710 () | 38465..43735 | - | 5271 | WP_000987005.1 | Multifunctional conjugation protein TraI | Relaxase |
| GXM24_RS22715 () | 43817..44044 | + | 228 | WP_000450532.1 | toxin-antitoxin system antitoxin VapB | Antitoxin Detail |
| GXM24_RS22720 () | 44044..44442 | + | 399 | WP_000911324.1 | tRNA(fMet)-specific endonuclease VapC | Toxin Detail |
| GXM24_RS22725 () | 44451..46604 | - | 2154 | WP_000009350.1 | type IV conjugative transfer system coupling protein TraD | - |
| GXM24_RS22730 () | 46857..47588 | - | 732 | WP_000850422.1 | complement resistance protein TraT | - |
| GXM24_RS22735 () | 47613..48134 | - | 522 | WP_000632670.1 | conjugal transfer entry exclusion protein TraS | - |
| GXM24_RS22740 () | 48167..50983 | - | 2817 | WP_001007055.1 | conjugal transfer mating pair stabilization protein TraG | - |
| GXM24_RS22745 () | 50980..52353 | - | 1374 | WP_021553026.1 | conjugal transfer protein TraH | - |
| GXM24_RS22750 () | 52353..52766 | - | 414 | WP_001331260.1 | F-type conjugal transfer protein TrbF | - |
| GXM24_RS22755 () | 52720..53061 | - | 342 | WP_001443031.1 | P-type conjugative transfer protein TrbJ | - |
| GXM24_RS22760 () | 52991..53536 | - | 546 | WP_000059850.1 | type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB | - |
| GXM24_RS22765 () | 53523..53807 | - | 285 | WP_000624109.1 | type-F conjugative transfer system pilin chaperone TraQ | - |
| GXM24_RS22770 () | 53888..54202 | + | 315 | WP_000415566.1 | protein ArtA | - |
| GXM24_RS22775 () | 54204..54551 | - | 348 | WP_001287913.1 | conjugal transfer protein TrbA | - |
| GXM24_RS22780 () | 54567..55310 | - | 744 | WP_001030367.1 | type-F conjugative transfer system pilin assembly protein TraF | - |
| GXM24_RS22785 () | 55303..55560 | - | 258 | WP_000864318.1 | conjugal transfer protein TrbE | - |
| GXM24_RS22790 () | 55587..57395 | - | 1809 | WP_000821835.1 | type-F conjugative transfer system mating-pair stabilization protein TraN | - |
| GXM24_RS22795 () | 57392..58030 | - | 639 | WP_000777688.1 | type-F conjugative transfer system pilin assembly protein TrbC | - |
| GXM24_RS22800 () | 58039..59031 | - | 993 | WP_000830185.1 | conjugal transfer pilus assembly protein TraU | - |
| GXM24_RS22805 () | 59028..59660 | - | 633 | WP_001203720.1 | type-F conjugative transfer system protein TraW | - |
| GXM24_RS22810 () | 59657..60043 | - | 387 | WP_000099690.1 | type-F conjugative transfer system protein TrbI | - |
| GXM24_RS22815 () | 60040..62667 | - | 2628 | WP_001064243.1 | type IV secretion system protein TraC | - |
| GXM24_RS22820 () | 62827..63048 | - | 222 | WP_001278689.1 | conjugal transfer protein TraR | - |
| GXM24_RS22825 () | 63183..63698 | - | 516 | WP_010892541.1 | type IV conjugative transfer system lipoprotein TraV | - |
| GXM24_RS22830 () | 63695..63946 | - | 252 | WP_001038342.1 | conjugal transfer protein TrbG | - |
| GXM24_RS22835 () | 63958..64188 | - | 231 | WP_071587746.1 | conjugal transfer protein TrbD | - |
| GXM24_RS22840 () | 64142..64732 | - | 591 | WP_000002792.1 | conjugal transfer protein TraP | - |
| GXM24_RS22845 () | 64722..66149 | - | 1428 | WP_000146685.1 | conjugal transfer protein TraB | - |
| GXM24_RS22850 () | 66149..66853 | - | 705 | WP_072095570.1 | type-F conjugative transfer system secretin TraK | - |
| GXM24_RS22855 () | 66864..67430 | - | 567 | WP_000399792.1 | type IV conjugative transfer system protein TraE | - |
| GXM24_RS22860 () | 67452..67763 | - | 312 | WP_000012106.1 | type IV conjugative transfer system protein TraL | - |
| GXM24_RS22865 () | 67778..68143 | - | 366 | WP_000994779.1 | type IV conjugative transfer system pilin TraA | - |
| GXM24_RS22870 () | 68176..68571 | - | 396 | WP_001309237.1 | conjugal transfer relaxosome protein TraY | - |
| GXM24_RS22875 () | 68670..69359 | - | 690 | WP_000283385.1 | conjugal transfer transcriptional regulator TraJ | - |
| GXM24_RS22880 () | 69546..69929 | - | 384 | WP_001151527.1 | relaxosome protein TraM | - |
| GXM24_RS22885 () | 70262..70852 | + | 591 | WP_001375132.1 | hypothetical protein | VF |
| GXM24_RS22890 () | 71148..71969 | - | 822 | WP_001234417.1 | DUF945 domain-containing protein | - |
| GXM24_RS22895 () | 72088..72375 | - | 288 | WP_000107542.1 | hypothetical protein | - |
| GXM24_RS23150 () | 72400..72606 | - | 207 | WP_000547965.1 | hypothetical protein | - |
| GXM24_RS23080 () | 72676..73035 | + | 360 | Protein_71 | hypothetical protein | - |
| GXM24_RS22905 () | 73273..73431 | - | 159 | WP_001302184.1 | type I toxin-antitoxin system Hok family toxin | Toxin Detail |
| - () | 73496..73694 | - | 199 | NuclAT_0 | - | Antitoxin Detail |
| - () | 73496..73694 | - | 199 | NuclAT_0 | - | Antitoxin Detail |
| - () | 73496..73694 | - | 199 | NuclAT_0 | - | Antitoxin Detail |
| - () | 73496..73694 | - | 199 | NuclAT_0 | - | Antitoxin Detail |
| GXM24_RS22910 () | 73706..74425 | - | 720 | WP_000116348.1 | plasmid SOS inhibition protein A | - |
| GXM24_RS22915 () | 74422..74856 | - | 435 | WP_000845928.1 | conjugation system SOS inhibitor PsiB | - |
| GXM24_RS22920 () | 74911..76869 | - | 1959 | WP_000117173.1 | ParB/RepB/Spo0J family partition protein | - |
| GXM24_RS22925 () | 76935..77168 | - | 234 | WP_000005990.1 | DUF905 family protein | - |
| GXM24_RS22930 () | 77225..77764 | - | 540 | WP_000290801.1 | single-stranded DNA-binding protein | - |
| GXM24_RS22940 () | 78570..78761 | - | 192 | WP_001027495.1 | hypothetical protein | - |
| GXM24_RS22945 () | 78758..79180 | - | 423 | WP_000271685.1 | DUF1380 family protein | - |
| GXM24_RS22950 () | 79227..79529 | - | 303 | WP_072095193.1 | antirestriction protein | - |
| GXM24_RS23155 () | 80066..80842 | - | 777 | WP_001005032.1 | hypothetical protein | - |
| GXM24_RS22965 () | 80888..81442 | - | 555 | WP_001358893.1 | DUF1380 family protein | - |
| GXM24_RS22970 () | 81336..81557 | - | 222 | WP_001104904.1 | hypothetical protein | - |
| GXM24_RS22975 () | 81558..82241 | - | 684 | WP_000085939.1 | DNA methylase | - |
| GXM24_RS22980 () | 82318..82623 | - | 306 | WP_010892536.1 | hypothetical protein | - |
| GXM24_RS23160 () | 82627..83528 | - | 902 | Protein_86 | DUF1281 domain-containing protein | - |
| GXM24_RS22995 () | 84481..85452 | - | 972 | WP_000817031.1 | ParB/RepB/Spo0J family plasmid partition protein | - |
| GXM24_RS23000 () | 85452..86618 | - | 1167 | WP_000772446.1 | Sporulation initiation inhibitor protein Soj | VF |
| GXM24_RS23005 () | 87206..87961 | - | 756 | WP_000852146.1 | replication initiation protein RepE | - |
| GXM24_RS23010 () | 88735..89541 | - | 807 | WP_000016982.1 | site-specific integrase | - |
| GXM24_RS23015 () | 89542..89847 | - | 306 | WP_001159868.1 | type II toxin-antitoxin system toxin CcdB | Toxin Detail |
| GXM24_RS23020 () | 89849..90067 | - | 219 | WP_000813634.1 | type II toxin-antitoxin system antitoxin CcdA | Antitoxin Detail |
| GXM24_RS23025 () | 90647..91735 | + | 1089 | WP_000952217.1 | transcriptional repressor PifC | - |
| GXM24_RS23030 () | 91737..93962 | + | 2226 | WP_000698737.1 | phage T7 exclusion protein | - |
| GXM24_RS23035 () | 94012..94911 | - | 900 | WP_000963206.1 | nucleotide-binding protein | - |
| GXM24_RS23040 () | 94901..95191 | - | 291 | WP_000538310.1 | hypothetical protein | - |
| GXM24_RS23045 () | 97306..97947 | + | 642 | WP_000990665.1 | hypothetical protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Escherichia coli K-12 | Conjugative plasmid | TA6145, TA6369, TA20275 | NC_002483 | 1..99159 | 0 |