MGE detailed information
MGE type: Genomic_island MGE length: 11570 bp
Accession: NZ_CP035884 Location: 1835124..1846693 Organism: Escherichia coli strain LSN03-016011/A Replicon: chromosome
Accession: NZ_CP035884 Location: 1835124..1846693 Organism: Escherichia coli strain LSN03-016011/A Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| EW995_RS08810 (1831449) | 1831449..1832657 | - | 1209 | WP_001352528.1 | propionate kinase | - |
| EW995_RS08815 (1832683) | 1832683..1834014 | - | 1332 | WP_000107723.1 | threonine/serine transporter TdcC | - |
| EW995_RS08820 (1834036) | 1834036..1835025 | - | 990 | WP_000548347.1 | bifunctional threonine ammonia-lyase/L-serine ammonia-lyase TdcB | - |
| EW995_RS08825 (1835124) | 1835124..1836062 | - | 939 | WP_000104211.1 | transcriptional regulator TdcA | - |
| EW995_RS08830 (1836377) | 1836377..1836595 | + | 219 | WP_001301311.1 | transcriptional activator TdcR | - |
| EW995_RS08835 (1836851) | 1836851..1837390 | + | 540 | WP_000675733.1 | protein YhaB | - |
| EW995_RS08840 (1837412) | 1837412..1838600 | + | 1189 | Protein_1731 | YhaC family protein | - |
| EW995_RS08850 (1839517) | 1839517..1840662 | - | 1146 | WP_001297158.1 | glycerate 2-kinase | - |
| EW995_RS08855 (1840759) | 1840759..1841649 | - | 891 | WP_001303675.1 | 2-hydroxy-3-oxopropionate reductase | - |
| EW995_RS08860 (1841679) | 1841679..1842449 | - | 771 | WP_001058214.1 | 2-dehydro-3-deoxyglucarate aldolase | - |
| EW995_RS08865 (1842465) | 1842465..1843799 | - | 1335 | WP_000599653.1 | galactarate/glucarate/glycerate transporter GarP | - |
| EW995_RS08870 (1844174) | 1844174..1845745 | + | 1572 | WP_001273761.1 | galactarate dehydratase | - |
| EW995_RS08875 (1845894) | 1845894..1846229 | + | 336 | WP_001307405.1 | type II toxin-antitoxin system antitoxin PrlF | Antitoxin Detail |
| EW995_RS08880 (1846229) | 1846229..1846693 | + | 465 | WP_000347251.1 | type II toxin-antitoxin system ribonuclease toxin YhaV | Toxin Detail |
| EW995_RS08885 (1846748) | 1846748..1847557 | - | 810 | WP_000072192.1 | aga operon transcriptional regulator AgaR | - |
| EW995_RS08890 (1847806) | 1847806..1849086 | + | 1281 | WP_000681903.1 | tagatose-bisphosphate aldolase subunit KbaZ | - |
| EW995_RS08895 (1849109) | 1849109..1849582 | + | 474 | WP_001295547.1 | PTS N-acetylgalactosamine transporter subunit IIB | - |
| EW995_RS08900 (1849593) | 1849593..1850372 | + | 780 | WP_000406214.1 | PTS N-acetylgalactosamine transporter subunit IIC | - |
| EW995_RS08905 (1850362) | 1850362..1851240 | + | 879 | WP_001295548.1 | PTS N-acetylgalactosamine transporter subunit IID | - |
| EW995_RS08910 (1851258) | 1851258..1851692 | + | 435 | WP_000948824.1 | PTS galactosamine/N-acetylgalactosamine transporter subunit IIA | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Escherichia coli str. K-12 substr. MC4100 | Genomic island | TA20080 | HG738867 | 3504819..3516493 | 0.008 | |
| Escherichia coli str. K-12 substr. W3110 | Genomic island | TA21455 | NC_007779 | 3265982..3277656 | 0.008 | |
| Escherichia coli HS | Genomic island | TA22436 | NC_009800 | 3314965..3326421 | 0.006 | |
| Escherichia coli str. K-12 substr. W3110 strain K-12 substr. ZK126 | Genomic island | TA68442 | NZ_CP017979 | 3158126..3169800 | 0.008 | |
| Escherichia coli C | Genomic island | TA75057 | NZ_CP020543 | 640607..652281 | 0.009 | |
| Escherichia coli str. K-12 substr. MC4100 strain K-12 | Genomic island | TA285025 | NZ_HG738867 | 3504819..3516493 | 0.008 |