MGE detailed information
MGE type: Genomic_island MGE length: 11570 bp
Accession: NZ_CP035836 Location: 2537941..2549510 Organism: Escherichia coli strain WS1933D Replicon: chromosome
Accession: NZ_CP035836 Location: 2537941..2549510 Organism: Escherichia coli strain WS1933D Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| EXA03_RS12585 (2534266) | 2534266..2535474 | - | 1209 | WP_001295545.1 | propionate kinase | - |
| EXA03_RS12590 (2535500) | 2535500..2536831 | - | 1332 | WP_000107723.1 | threonine/serine transporter TdcC | - |
| EXA03_RS12595 (2536853) | 2536853..2537842 | - | 990 | WP_000548347.1 | bifunctional threonine ammonia-lyase/L-serine ammonia-lyase TdcB | - |
| EXA03_RS12600 (2537941) | 2537941..2538879 | - | 939 | WP_000104211.1 | transcriptional regulator TdcA | - |
| EXA03_RS12605 (2539194) | 2539194..2539412 | + | 219 | WP_001301311.1 | transcriptional activator TdcR | - |
| EXA03_RS12610 (2539668) | 2539668..2540207 | + | 540 | WP_000675733.1 | protein YhaB | - |
| EXA03_RS12615 (2540229) | 2540229..2541417 | + | 1189 | Protein_2479 | YhaC family protein | - |
| EXA03_RS12625 (2542334) | 2542334..2543479 | - | 1146 | WP_001295546.1 | glycerate 2-kinase | - |
| EXA03_RS12630 (2543576) | 2543576..2544466 | - | 891 | WP_001303675.1 | 2-hydroxy-3-oxopropionate reductase | - |
| EXA03_RS12635 (2544496) | 2544496..2545266 | - | 771 | WP_001058227.1 | 2-dehydro-3-deoxyglucarate aldolase | - |
| EXA03_RS12640 (2545282) | 2545282..2546616 | - | 1335 | WP_000599636.1 | galactarate/glucarate/glycerate transporter GarP | - |
| EXA03_RS12645 (2546991) | 2546991..2548562 | + | 1572 | WP_001273763.1 | galactarate dehydratase | - |
| EXA03_RS12650 (2548711) | 2548711..2549046 | + | 336 | WP_001307405.1 | type II toxin-antitoxin system antitoxin PrlF | Antitoxin Detail |
| EXA03_RS12655 (2549046) | 2549046..2549510 | + | 465 | WP_000347251.1 | type II toxin-antitoxin system ribonuclease toxin YhaV | Toxin Detail |
| EXA03_RS12660 (2549565) | 2549565..2550374 | - | 810 | WP_000072187.1 | aga operon transcriptional regulator AgaR | - |
| EXA03_RS12665 (2550623) | 2550623..2551903 | + | 1281 | WP_000681906.1 | tagatose-bisphosphate aldolase subunit KbaZ | - |
| EXA03_RS12670 (2551926) | 2551926..2552399 | + | 474 | WP_001295547.1 | PTS N-acetylgalactosamine transporter subunit IIB | - |
| EXA03_RS12675 (2552410) | 2552410..2553189 | + | 780 | WP_000406213.1 | PTS N-acetylgalactosamine transporter subunit IIC | - |
| EXA03_RS12680 (2553179) | 2553179..2554057 | + | 879 | WP_001295548.1 | PTS N-acetylgalactosamine transporter subunit IID | - |
| EXA03_RS12685 (2554075) | 2554075..2554509 | + | 435 | WP_000948827.1 | PTS galactosamine/N-acetylgalactosamine transporter subunit IIA | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Escherichia coli str. K-12 substr. MC4100 | Genomic island | TA20080 | HG738867 | 3504819..3516493 | 0.009 | |
| Escherichia coli str. K-12 substr. W3110 | Genomic island | TA21455 | NC_007779 | 3265982..3277656 | 0.009 | |
| Escherichia coli HS | Genomic island | TA22436 | NC_009800 | 3314965..3326421 | 0.006 | |
| Escherichia coli str. K-12 substr. W3110 strain K-12 substr. ZK126 | Genomic island | TA68442 | NZ_CP017979 | 3158126..3169800 | 0.009 | |
| Escherichia coli C | Genomic island | TA75057 | NZ_CP020543 | 640607..652281 | 0.009 | |
| Escherichia coli str. K-12 substr. MC4100 strain K-12 | Genomic island | TA285025 | NZ_HG738867 | 3504819..3516493 | 0.009 |