MGE detailed information
MGE type: Prophage MGE length: 48539 bp
Accession: NZ_CP026073 Location: 545174..593712 Organism: Staphylococcus aureus strain FDAARGOS_42 Replicon: chromosome
Accession: NZ_CP026073 Location: 545174..593712 Organism: Staphylococcus aureus strain FDAARGOS_42 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| RL00_RS03080 () | 540343..541074 | + | 732 | WP_000273371.1 | segregation/condensation protein A | - |
| RL00_RS03085 () | 541067..541609 | + | 543 | WP_000368657.1 | SMC-Scp complex subunit ScpB | - |
| RL00_RS03090 () | 541602..542339 | + | 738 | WP_000159577.1 | rRNA pseudouridine synthase | - |
| RL00_RS03095 () | 542472..543197 | + | 726 | WP_000064078.1 | two-component system response regulator SrrA | - |
| RL00_RS03100 () | 543178..544929 | + | 1752 | WP_000987769.1 | two-component system sensor histidine kinase SrrB | - |
| RL00_RS03105 () | 545174..546082 | + | 909 | WP_001793476.1 | DUF1672 domain-containing protein | - |
| RL00_RS03110 () | 546094..548120 | + | 2027 | Protein_550 | hypothetical protein | - |
| RL00_RS03115 () | 548163..549368 | - | 1206 | WP_000264191.1 | site-specific integrase | - |
| RL00_RS03120 () | 549478..550101 | + | 624 | WP_001166482.1 | hypothetical protein | - |
| RL00_RS03125 () | 550300..550695 | - | 396 | WP_000449653.1 | hypothetical protein | - |
| RL00_RS03130 () | 550724..551158 | - | 435 | WP_000755718.1 | hypothetical protein | - |
| RL00_RS03135 () | 551176..551637 | - | 462 | WP_000525002.1 | hypothetical protein | Toxin Detail |
| RL00_RS03140 () | 551650..551973 | - | 324 | WP_001260485.1 | helix-turn-helix domain-containing protein | Antitoxin Detail |
| RL00_RS03145 () | 552137..552385 | + | 249 | WP_000272860.1 | helix-turn-helix domain-containing protein | - |
| RL00_RS03150 () | 552401..552646 | + | 246 | WP_001025401.1 | DUF2829 domain-containing protein | Toxin Detail |
| RL00_RS03155 () | 552615..552980 | - | 366 | WP_001128433.1 | hypothetical protein | Antitoxin Detail |
| RL00_RS03160 () | 553035..553250 | + | 216 | WP_001036302.1 | hypothetical protein | - |
| RL00_RS03165 () | 553275..553538 | + | 264 | WP_001124190.1 | helix-turn-helix domain-containing protein | - |
| RL00_RS03170 () | 553551..553712 | + | 162 | WP_001285963.1 | DUF1270 family protein | - |
| RL00_RS03175 () | 553791..554114 | + | 324 | WP_000174994.1 | hypothetical protein | - |
| RL00_RS03180 () | 554129..554491 | + | 363 | WP_000985979.1 | hypothetical protein | - |
| RL00_RS03185 () | 554488..555654 | + | 1167 | WP_000762552.1 | DUF2800 domain-containing protein | - |
| RL00_RS03190 () | 555680..556237 | + | 558 | WP_000645048.1 | DUF2815 family protein | - |
| RL00_RS03195 () | 556305..558257 | + | 1953 | WP_001801657.1 | DNA polymerase | - |
| RL00_RS03200 () | 558270..558455 | + | 186 | WP_001164629.1 | DUF3113 family protein | - |
| RL00_RS03205 () | 558455..558856 | + | 402 | WP_000113974.1 | PVL family protein | - |
| RL00_RS03210 () | 558856..559113 | + | 258 | WP_000022728.1 | DUF3310 domain-containing protein | - |
| RL00_RS03215 () | 559116..559316 | + | 201 | WP_000235322.1 | hypothetical protein | - |
| RL00_RS03220 () | 559331..559573 | + | 243 | WP_000132192.1 | hypothetical protein | - |
| RL00_RS03225 () | 559588..559839 | + | 252 | WP_001826875.1 | DUF1024 family protein | Toxin Detail |
| RL00_RS14670 () | 559829..560002 | + | 174 | WP_000028424.1 | hypothetical protein | Antitoxin Detail |
| RL00_RS03230 () | 560003..560284 | + | 282 | WP_000454993.1 | hypothetical protein | - |
| RL00_RS14675 () | 560285..560446 | + | 162 | WP_000889679.1 | hypothetical protein | - |
| RL00_RS03235 () | 560461..560994 | + | 534 | WP_001061841.1 | dUTPase | - |
| RL00_RS03240 () | 561031..561276 | + | 246 | WP_001282074.1 | hypothetical protein | - |
| RL00_RS03245 () | 561273..561461 | + | 189 | WP_000195817.1 | DUF1381 domain-containing protein | - |
| RL00_RS03250 () | 561436..561636 | + | 201 | WP_001125015.1 | hypothetical protein | - |
| RL00_RS03255 () | 561639..561791 | + | 153 | WP_000237867.1 | transcriptional activator RinB | - |
| RL00_RS03260 () | 561859..562059 | + | 201 | WP_000265252.1 | DUF1514 family protein | - |
| RL00_RS03270 () | 562347..564794 | + | 2448 | WP_000884870.1 | virulence-associated E family protein | - |
| RL00_RS03275 () | 564903..565001 | - | 99 | WP_001801650.1 | hypothetical protein | - |
| RL00_RS03280 () | 565135..565425 | + | 291 | WP_001548892.1 | VRR-NUC domain-containing protein | - |
| RL00_RS03285 () | 565406..566773 | + | 1368 | WP_001793488.1 | DEAD/DEAH box helicase | - |
| RL00_RS03290 () | 566786..567223 | + | 438 | WP_000528512.1 | transcriptional regulator | - |
| RL00_RS03295 () | 567380..567694 | + | 315 | WP_000160692.1 | HNH endonuclease | - |
| RL00_RS03300 () | 567822..568127 | + | 306 | WP_000778933.1 | P27 family phage terminase small subunit | - |
| RL00_RS03305 () | 568117..569808 | + | 1692 | WP_000153544.1 | terminase large subunit | - |
| RL00_RS03310 () | 569813..571051 | + | 1239 | WP_001100665.1 | phage portal protein | - |
| RL00_RS03315 () | 571035..571808 | + | 774 | WP_000061866.1 | Clp protease ClpP | - |
| RL00_RS03320 () | 571820..572983 | + | 1164 | WP_001142734.1 | phage major capsid protein | - |
| RL00_RS03325 () | 573052..573330 | + | 279 | WP_000050973.1 | head-tail connector protein | - |
| RL00_RS03330 () | 573342..573674 | + | 333 | WP_000395498.1 | hypothetical protein | - |
| RL00_RS03335 () | 573671..574072 | + | 402 | WP_000110023.1 | hypothetical protein | - |
| RL00_RS03340 () | 574073..574468 | + | 396 | WP_001023806.1 | DUF3168 domain-containing protein | - |
| RL00_RS03345 () | 574503..575144 | + | 642 | WP_000807536.1 | tail protein | - |
| RL00_RS03350 () | 575236..575691 | + | 456 | WP_000169128.1 | Ig domain-containing protein | - |
| RL00_RS03355 () | 575749..576090 | + | 342 | WP_000589166.1 | hypothetical protein | - |
| RL00_RS03360 () | 576141..576299 | + | 159 | WP_000438833.1 | hypothetical protein | - |
| RL00_RS03365 () | 576313..582513 | + | 6201 | WP_001003441.1 | phage tail tape measure protein | - |
| RL00_RS03370 () | 582513..583337 | + | 825 | WP_001190533.1 | phage tail family protein | - |
| RL00_RS03375 () | 583346..584929 | + | 1584 | WP_000384474.1 | prophage endopeptidase tail family protein | - |
| RL00_RS03380 () | 584929..585219 | + | 291 | WP_000179858.1 | hypothetical protein | - |
| RL00_RS03385 () | 585235..587145 | + | 1911 | WP_000429551.1 | minor structural protein | - |
| RL00_RS03390 () | 587145..588611 | + | 1467 | WP_000067140.1 | BppU family phage baseplate upper protein | - |
| RL00_RS03395 () | 588611..589000 | + | 390 | WP_001166599.1 | DUF2977 domain-containing protein | - |
| RL00_RS03400 () | 588993..589157 | + | 165 | WP_000916020.1 | XkdX family protein | - |
| RL00_RS03405 () | 589203..589502 | + | 300 | WP_000466784.1 | DUF2951 domain-containing protein | - |
| RL00_RS03410 () | 589638..589940 | + | 303 | WP_000339141.1 | phage holin | - |
| RL00_RS03415 () | 589951..591405 | + | 1455 | WP_000909207.1 | N-acetylmuramoyl-L-alanine amidase | - |
| RL00_RS03420 () | 591795..592733 | + | 939 | WP_000239545.1 | Panton-Valentine bi-component leukocidin subunit S | - |
| RL00_RS03425 () | 592729..593712 | + | 984 | WP_024937002.1 | Panton-Valentine bi-component leukocidin subunit F | - |
| RL00_RS03430 () | 593961..594146 | + | 186 | WP_000470336.1 | hypothetical protein | - |
| RL00_RS03435 () | 594237..595142 | + | 906 | WP_000476866.1 | DUF1672 domain-containing protein | - |
| RL00_RS03440 () | 595200..596117 | + | 918 | WP_000476881.1 | DUF1672 domain-containing protein | - |
| RL00_RS03445 () | 596174..597088 | + | 915 | WP_000476340.1 | DUF1672 domain-containing protein | - |
| RL00_RS03450 () | 597498..598043 | + | 546 | WP_001186912.1 | ECF transporter S component | - |
| RL00_RS03455 () | 598149..598397 | - | 249 | WP_001151997.1 | ferredoxin | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Staphylococcus aureus subsp. aureus MW2 | Prophage | TA611, TA10107, TA10153, TA10156, TA20731 | NC_003923 | 1526005..1592556 | 0.007 |