Detailed information of component protein


Summary

Component ID T6CP000430
Component protein type TssK
T6SS ID (Type) T6SS00050 experimental (Type i1)
Strain Photorhabdus laumondii subsp. laumondii TTO1
Replicon chromosome
Sequence Protein sequence (451 a.a.); Nucleotide sequence (1353 bp)
Reference
experimental Experimental investigation has been performed on this T6SS
External database links

Locus tag (Gene) PLU_RS01775
Coordinate (Strand) 392279..393631 (-)
NCBI ID WP_011144754.1
RefSeq NC_005126
Uniprot ID A0A6L9JL91_PHOLM, Q7N9H1_PHOLL
KEGG ID plum:A4R40_01780, plu:plu0365
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
T6SS_VasE PF05936.14 1.4e-145 19..445
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-450 MPGKNRVIWREGLFIKPQHFQQQQKHNDYLAHSRQTSLTSYSYGFSSLTLDKDLLALGRISIIEASGIMPDGTVFSIPNQDATPQPLDVVNIHENNSKDIYLALPIANDILNEISHSESNHAGAVRYREYMEDIRDLHTDGGDICQVMLAQLTPVLKQGSEDLSAFSVLPLCQIIEKRPTGTIILDEDFVPTCTSIRVSTQLKNYMDEIDRAMTERGRSLANRIGSPGQQGVADVAEFMMLQLVNRVQPWFTHYAGQAILHPQDFFTQLIQTCGELRTFTHESRQVGNMPIYKHDDLTETFKEVMILMREAMGVVLTPRAIPIKLQTQANGIRVAHIHDRNVLTNAEFILAIRAQVPHDQLLRKFAQQTKVTSAERIREMVSIQLPAVALAALPSAPRQLPYHAGYTYFRLEQQGDAWKDILKGNSIAFHVSGEFPGLDMQFWAVRNGSA


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9913 - -


  Protein sequence: 451 a.a.    

>T6CP000430 NC_005126:c393631-392279 [Photorhabdus laumondii subsp. laumondii TTO1] [TssK]
MPGKNRVIWREGLFIKPQHFQQQQKHNDYLAHSRQTSLTSYSYGFSSLTLDKDLLALGRISIIEASGIMPDGTVFSIPNQ
DATPQPLDVVNIHENNSKDIYLALPIANDILNEISHSESNHAGAVRYREYMEDIRDLHTDGGDICQVMLAQLTPVLKQGS
EDLSAFSVLPLCQIIEKRPTGTIILDEDFVPTCTSIRVSTQLKNYMDEIDRAMTERGRSLANRIGSPGQQGVADVAEFMM
LQLVNRVQPWFTHYAGQAILHPQDFFTQLIQTCGELRTFTHESRQVGNMPIYKHDDLTETFKEVMILMREAMGVVLTPRA
IPIKLQTQANGIRVAHIHDRNVLTNAEFILAIRAQVPHDQLLRKFAQQTKVTSAERIREMVSIQLPAVALAALPSAPRQL
PYHAGYTYFRLEQQGDAWKDILKGNSIAFHVSGEFPGLDMQFWAVRNGSA*

  Nucleotide sequence: 1353 bp    

>T6CP000430 NC_005126:c393631-392279 [Photorhabdus laumondii subsp. laumondii TTO1] [TssK]
ATGCCAGGCAAGAATCGGGTGATTTGGCGCGAAGGATTATTCATCAAGCCACAACACTTTCAACAACAACAAAAACATAA
TGACTATCTGGCTCATAGCCGCCAGACGTCCTTAACTAGTTATAGTTATGGCTTCAGTTCTCTGACACTGGATAAAGACC
TTCTCGCTCTAGGACGCATCAGTATCATCGAAGCCAGCGGTATCATGCCAGACGGCACAGTGTTCTCGATTCCTAATCAG
GATGCAACTCCTCAACCGCTTGATGTTGTGAATATTCACGAGAACAACAGTAAAGATATCTATCTGGCGCTACCAATAGC
TAACGATATTCTGAATGAAATCTCTCATTCAGAATCCAATCATGCAGGAGCTGTGCGCTACCGTGAATACATGGAAGATA
TCCGTGATTTGCATACAGATGGCGGTGATATCTGTCAAGTCATGCTGGCACAACTGACGCCGGTTCTAAAACAGGGTTCA
GAAGATCTCAGTGCTTTTTCCGTACTCCCGCTATGCCAGATAATAGAAAAGCGCCCTACCGGAACTATCATACTGGATGA
AGATTTCGTACCAACCTGTACATCCATCAGGGTCTCTACTCAATTAAAAAATTATATGGATGAAATAGATAGAGCGATGA
CAGAACGAGGCAGATCACTCGCTAACCGGATTGGTTCTCCCGGACAGCAAGGAGTCGCTGATGTTGCTGAATTTATGATG
CTCCAGCTAGTTAACCGAGTTCAGCCGTGGTTTACCCACTACGCAGGACAAGCCATTTTGCATCCACAAGATTTTTTCAC
TCAGCTGATCCAAACCTGTGGTGAACTGAGAACATTCACTCATGAATCCCGTCAGGTCGGCAATATGCCAATTTACAAAC
ACGACGATCTGACGGAAACATTCAAGGAAGTCATGATCCTCATGCGCGAAGCAATGGGCGTTGTTCTGACCCCGCGAGCG
ATTCCAATTAAGCTACAAACTCAAGCCAATGGTATCCGGGTGGCCCACATCCATGATCGCAATGTTTTGACGAACGCGGA
ATTCATTCTGGCAATCCGCGCACAAGTTCCACATGATCAATTACTCCGCAAGTTTGCTCAACAGACTAAAGTTACATCGG
CTGAAAGGATCCGCGAAATGGTCAGCATCCAGTTGCCTGCCGTAGCACTGGCGGCGCTTCCCTCTGCCCCACGTCAGTTG
CCTTATCATGCTGGTTACACCTATTTCCGACTTGAGCAACAAGGCGACGCATGGAAAGACATTCTAAAAGGTAACTCCAT
CGCTTTCCACGTTTCAGGAGAATTCCCTGGATTAGATATGCAATTCTGGGCGGTTAGGAATGGGAGTGCCTAA