Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilU   Type   Machinery gene
Locus tag   ABFT96_RS07025 Genome accession   NZ_CP155942
Coordinates   1659298..1660428 (+) Length   376 a.a.
NCBI ID   WP_012437803.1    Uniprot ID   -
Organism   Xanthomonas campestris pv. campestris strain DAPP-PG 308     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1654298..1665428
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABFT96_RS07000 (ABFT96_06995) - 1654556..1655146 (-) 591 WP_011037887.1 M23 family metallopeptidase -
  ABFT96_RS07005 (ABFT96_07000) - 1655290..1655712 (-) 423 WP_011037886.1 HU family DNA-binding protein -
  ABFT96_RS07010 (ABFT96_07005) proC 1656257..1657117 (-) 861 WP_016944106.1 pyrroline-5-carboxylate reductase -
  ABFT96_RS07015 (ABFT96_07010) - 1657158..1657841 (-) 684 WP_012437802.1 YggS family pyridoxal phosphate-dependent enzyme -
  ABFT96_RS07020 (ABFT96_07015) pilT 1658128..1659165 (+) 1038 WP_003489919.1 type IV pilus twitching motility protein PilT Machinery gene
  ABFT96_RS07025 (ABFT96_07020) pilU 1659298..1660428 (+) 1131 WP_012437803.1 PilT/PilU family type 4a pilus ATPase Machinery gene
  ABFT96_RS07030 (ABFT96_07025) - 1660708..1661382 (+) 675 WP_014508435.1 YitT family protein -
  ABFT96_RS07035 (ABFT96_07030) - 1661396..1662295 (-) 900 WP_012437805.1 DUF72 domain-containing protein -
  ABFT96_RS07040 (ABFT96_07035) - 1662518..1663795 (-) 1278 WP_012437806.1 hypothetical protein -
  ABFT96_RS07045 (ABFT96_07040) - 1663777..1664316 (-) 540 WP_012437807.1 DNA-3-methyladenine glycosylase I -

Sequence

Protein


Download         Length: 376 a.a.        Molecular weight: 41982.19 Da        Isoelectric Point: 6.6612

>NTDB_id=999989 ABFT96_RS07025 WP_012437803.1 1659298..1660428(+) (pilU) [Xanthomonas campestris pv. campestris strain DAPP-PG 308]
MSTIDFTSFLKLMAHQNASDLFITSGMPPAIKVHGKISPITQTPLTAQQSRDLVLNVMTPSQREEFEKTHECNFAIGVSG
VGRFRVSCFYQRNQVGMVLRRIETRIPTVEELSLPPVIKTLAMTKRGIIIFVGATGTGKSTSLAAMIGYRNQNSTGHIIT
IEDPIEFVHKHEGCIITQREVGIDTDSWENALKNTLRQAPDVIMIGEVRTREGMDHAIAFAETGHLVLCTLHANNANQAM
DRIINFFPEDRRNQLLMDLSLNLKGVVAQQLIPTPDGRGRRVAMEIMLGTPLVQDYIRDGEIHKLKEIMKESTNLGMRTF
DQSLFELYQAGEISYEDALRYADSQNEVRLRIKLSQGGDAKTLSQGLDGVEIAEVR

Nucleotide


Download         Length: 1131 bp        

>NTDB_id=999989 ABFT96_RS07025 WP_012437803.1 1659298..1660428(+) (pilU) [Xanthomonas campestris pv. campestris strain DAPP-PG 308]
ATGAGCACCATCGACTTCACCTCCTTCCTCAAGCTGATGGCGCACCAGAATGCGTCGGATCTGTTCATCACCTCTGGCAT
GCCGCCGGCGATCAAGGTGCATGGCAAGATCAGCCCGATCACCCAGACGCCGCTGACCGCGCAGCAGAGTCGCGACCTGG
TGTTGAACGTGATGACGCCCTCGCAGCGCGAGGAATTCGAAAAGACCCACGAGTGCAACTTCGCCATCGGCGTGTCCGGG
GTGGGGCGGTTCCGTGTGAGCTGCTTCTATCAGCGCAACCAGGTGGGAATGGTGCTGCGTCGGATCGAGACGCGCATTCC
CACCGTGGAGGAGCTGAGCCTGCCGCCGGTGATCAAGACACTGGCCATGACCAAGCGCGGCATCATCATCTTTGTCGGCG
CTACCGGTACCGGCAAGTCGACCTCGCTGGCGGCGATGATCGGCTACCGCAACCAGAATTCCACCGGGCACATCATCACC
ATCGAAGACCCGATCGAATTCGTGCACAAGCACGAGGGCTGCATCATCACCCAGCGCGAAGTCGGCATTGATACCGATAG
CTGGGAAAATGCGTTGAAAAACACCCTGCGTCAGGCGCCGGACGTGATCATGATCGGCGAAGTGCGGACCCGCGAAGGCA
TGGACCATGCCATCGCCTTCGCCGAAACCGGTCACCTGGTGCTGTGCACGCTGCATGCCAACAACGCCAACCAGGCGATG
GACCGCATCATCAACTTCTTCCCGGAAGATCGCCGCAATCAGCTGCTGATGGACCTGTCGCTCAACCTCAAGGGTGTGGT
GGCGCAGCAGTTGATCCCGACCCCGGATGGCCGCGGCCGCCGCGTGGCGATGGAGATCATGCTGGGCACGCCGCTGGTGC
AGGACTACATCCGCGACGGCGAGATCCACAAGCTCAAGGAGATCATGAAGGAGTCCACCAACCTGGGCATGCGCACCTTC
GATCAGAGCCTGTTCGAGCTGTACCAGGCGGGCGAGATCAGCTACGAAGACGCACTGCGCTACGCCGACTCGCAGAACGA
GGTGCGCCTGCGCATCAAGCTCTCGCAAGGCGGCGATGCCAAGACGCTGTCGCAGGGGCTCGATGGCGTGGAGATTGCCG
AGGTTCGGTAA

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(117-272)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilU Pseudomonas stutzeri DSM 10701

67.575

97.606

0.66
  pilU Acinetobacter baylyi ADP1

63.585

94.947

0.604
  pilU Vibrio cholerae strain A1552

53.371

94.681

0.505
  pilT Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

42.017

94.947

0.399
  pilT Acinetobacter baumannii strain A118

40.407

91.489

0.37
  pilT Acinetobacter nosocomialis M2

40.407

91.489

0.37
  pilT Acinetobacter baumannii D1279779

40.407

91.489

0.37
  pilT Pseudomonas aeruginosa PAK

41.194

89.096

0.367

Multiple sequence alignment