Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   ABFU06_RS19455 Genome accession   NZ_CP155938
Coordinates   4491104..4492624 (+) Length   506 a.a.
NCBI ID   WP_228944289.1    Uniprot ID   -
Organism   Xanthomonas campestris pv. raphani strain Xcc-R1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4486104..4497624
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABFU06_RS19430 (ABFU06_19375) speE 4487046..4487903 (+) 858 WP_115577813.1 polyamine aminopropyltransferase -
  ABFU06_RS19435 (ABFU06_19380) - 4488018..4488800 (-) 783 WP_228944287.1 hypothetical protein -
  ABFU06_RS19440 (ABFU06_19385) - 4489336..4489995 (+) 660 WP_228944288.1 RIO1 family regulatory kinase/ATPase -
  ABFU06_RS19445 (ABFU06_19390) - 4490287..4490625 (-) 339 WP_042595602.1 P-II family nitrogen regulator -
  ABFU06_RS19450 (ABFU06_19395) ubiK 4490816..4491088 (+) 273 WP_011038948.1 ubiquinone biosynthesis accessory factor UbiK -
  ABFU06_RS19455 (ABFU06_19400) comM 4491104..4492624 (+) 1521 WP_228944289.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  ABFU06_RS19460 (ABFU06_19405) - 4493007..4493516 (+) 510 WP_042595605.1 lipocalin family protein -
  ABFU06_RS19465 (ABFU06_19410) - 4493527..4493703 (-) 177 WP_012439469.1 hypothetical protein -
  ABFU06_RS19470 (ABFU06_19415) - 4494085..4495644 (+) 1560 WP_228944321.1 EAL domain-containing protein -
  ABFU06_RS19475 (ABFU06_19420) - 4496099..4496269 (-) 171 WP_154727132.1 hypothetical protein -
  ABFU06_RS19480 (ABFU06_19425) - 4496283..4497404 (-) 1122 WP_011038953.1 acyl-CoA desaturase -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 53899.61 Da        Isoelectric Point: 8.3405

>NTDB_id=999944 ABFU06_RS19455 WP_228944289.1 4491104..4492624(+) (comM) [Xanthomonas campestris pv. raphani strain Xcc-R1]
MSLALVHSRARVGVHAPEVRVEVHLSGGLPSTQIVGLPEAAVRESRERVRAALLCAQFEFPARRITINLAPADLPKDGGR
FDLPIALGILAASGQIDRQALADYEFLGELALTGELRGIDGVLPAALAAAQAGRRLIVPLANGAEAAIAGHVQAFTARTL
LEVCAALNGTQPPPPAELAIVALGARALPDMADVRGQPHARRALEIAAAGGHHLLLVGSPGCGKTLLASRLPSLLPDASE
AEALETAAITSISGRGLDLARWRQRPYRAPHHTASAVALVGGGTHPRPGEISLAHNGVLFLDELPEWQRQTLEVLREPLE
SGVVTISRAARSMDFPARFQLVAAMNPCPCGWAGDASGRCRCSGDAMRRYRSRISGPLLDRIDLHVDVPRLPPQALRSGA
TGEDSASVRARVAAARERQQARAQVPNARLDQAATDRHCRLGNDDQLLLERAIEHLQLSARSMHRILRVSRTIADLDDSA
DIATRHLTEAIGYRKLDRALDTSSAA

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=999944 ABFU06_RS19455 WP_228944289.1 4491104..4492624(+) (comM) [Xanthomonas campestris pv. raphani strain Xcc-R1]
ATGAGTCTGGCGCTGGTGCACAGCCGTGCCCGCGTGGGAGTGCACGCGCCTGAAGTCCGGGTGGAAGTGCATCTCTCCGG
CGGCCTGCCTTCCACCCAGATCGTGGGCCTGCCCGAGGCCGCGGTGCGTGAGTCACGCGAACGGGTCCGTGCCGCCTTGC
TGTGCGCACAGTTCGAATTCCCCGCACGCCGCATCACCATCAACCTGGCGCCGGCGGATCTGCCCAAGGACGGCGGCCGC
TTCGACCTGCCGATCGCGCTCGGCATCCTTGCGGCCAGCGGGCAGATCGACCGCCAGGCCCTGGCCGACTACGAATTCCT
CGGCGAGCTGGCCCTCACCGGCGAGCTGCGCGGCATCGATGGGGTGCTGCCTGCGGCCCTGGCCGCCGCGCAGGCCGGGC
GGCGCCTGATCGTGCCGCTGGCCAACGGCGCCGAGGCGGCCATCGCCGGACACGTGCAGGCCTTTACCGCGCGCACCTTG
CTGGAAGTGTGCGCCGCACTCAACGGCACCCAGCCGCCACCGCCCGCCGAACTGGCGATCGTGGCGCTCGGCGCCCGCGC
GCTACCGGACATGGCCGACGTGCGCGGGCAGCCGCATGCGCGCCGGGCGCTGGAGATCGCCGCGGCCGGCGGCCATCACC
TGTTGCTGGTCGGCAGCCCTGGCTGCGGCAAGACCCTGCTGGCCTCGCGCCTGCCCAGTCTGTTGCCGGACGCCAGCGAG
GCCGAGGCGCTGGAAACCGCCGCCATCACCTCCATCAGCGGACGCGGCCTGGACCTGGCGCGCTGGCGGCAACGCCCTTA
TCGCGCCCCGCACCACACCGCCAGCGCGGTGGCGCTGGTGGGCGGCGGCACCCATCCGCGCCCGGGCGAGATCTCATTGG
CGCACAACGGGGTGCTGTTCCTGGACGAGCTGCCCGAATGGCAGCGGCAGACCCTGGAAGTGCTGCGCGAGCCACTGGAG
TCCGGCGTGGTCACCATCTCACGGGCCGCGCGCAGCATGGACTTCCCGGCGCGGTTCCAGCTGGTCGCCGCGATGAATCC
CTGCCCGTGCGGCTGGGCCGGCGATGCCAGCGGGCGATGCCGCTGCAGTGGTGACGCCATGCGCCGGTATCGCAGCCGCA
TCTCCGGGCCGCTGCTGGATCGCATCGACCTGCACGTCGACGTGCCGCGCCTGCCGCCGCAGGCACTGCGCAGCGGTGCG
ACCGGCGAAGACAGTGCCAGCGTGCGTGCACGCGTTGCCGCCGCACGCGAACGCCAGCAGGCACGTGCACAGGTGCCCAA
TGCCCGCCTGGACCAGGCCGCCACTGACCGCCACTGCCGGTTGGGCAATGACGATCAGCTGCTGCTGGAACGCGCCATCG
AACATCTGCAGCTGTCCGCGCGCTCGATGCACCGCATCCTGCGCGTCTCGCGCACCATCGCCGATCTCGACGACAGCGCC
GACATCGCCACCCGTCACCTCACCGAAGCCATCGGCTACCGCAAACTCGACCGTGCCCTTGATACCTCCAGCGCCGCATG
A

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(402-494)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-394)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

55.138

100

0.551
  comM Haemophilus influenzae Rd KW20

53.922

100

0.543
  comM Vibrio campbellii strain DS40M4

53.516

100

0.542
  comM Glaesserella parasuis strain SC1401

53.953

100

0.54
  comM Legionella pneumophila str. Paris

52.988

99.209

0.526
  comM Legionella pneumophila strain ERS1305867

52.988

99.209

0.526
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

46.245

100

0.462

Multiple sequence alignment